Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   D5R90_RS02000 Genome accession   NZ_CP032400
Coordinates   417262..418071 (-) Length   269 a.a.
NCBI ID   WP_003101333.1    Uniprot ID   A0A1J0MZV5
Organism   Streptococcus iniae strain YM011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 412262..423071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R90_RS01990 (D5R90_01990) smc 412921..416466 (-) 3546 WP_003101330.1 chromosome segregation protein SMC -
  D5R90_RS01995 (D5R90_01995) rnc 416467..417159 (-) 693 WP_003101331.1 ribonuclease III -
  D5R90_RS02000 (D5R90_02000) vicX 417262..418071 (-) 810 WP_003101333.1 MBL fold metallo-hydrolase Regulator
  D5R90_RS02005 (D5R90_02005) vicK 418075..419433 (-) 1359 WP_119773864.1 cell wall metabolism sensor histidine kinase VicK Regulator
  D5R90_RS02010 (D5R90_02010) vicR 419426..420136 (-) 711 WP_003101337.1 response regulator YycF Regulator
  D5R90_RS02015 (D5R90_02015) - 420393..421190 (+) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  D5R90_RS02020 (D5R90_02020) - 421187..422017 (+) 831 WP_016356082.1 transporter substrate-binding domain-containing protein -
  D5R90_RS02025 (D5R90_02025) - 422032..422733 (+) 702 WP_003101340.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30014.07 Da        Isoelectric Point: 5.5565

>NTDB_id=315424 D5R90_RS02000 WP_003101333.1 417262..418071(-) (vicX) [Streptococcus iniae strain YM011]
MEEVGFKYSILASGSTGNSFYIETPKKKLLVDAGLTGKKVTSLLAEIDRSPEDLDAILITHEHSDHIKGVGVLARKYNLD
IYANSKTWQMIDHRQMLGKIDVAQKHVFERDKMMTFGDLDVESFGVSHDAADPQFYRFMKDGKSFVMLTDTGYVSDRLSG
VIENADAYLIESNHDIEILRSGSYPWSLKQRILSDQGHLSNEDGAAAMIRSMGNKTKKIFLGHLSKENNIKELAHMTMEN
QLAMADLPLGSQFTVFDTSPDTACPLSDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=315424 D5R90_RS02000 WP_003101333.1 417262..418071(-) (vicX) [Streptococcus iniae strain YM011]
ATGGAAGAAGTAGGATTTAAATACAGTATTTTAGCATCTGGATCGACAGGTAATAGCTTCTATATTGAAACACCTAAGAA
GAAATTATTGGTTGATGCAGGCTTAACAGGAAAAAAAGTAACCAGCTTGCTAGCTGAGATAGACCGCTCTCCTGAAGATT
TAGACGCCATATTAATTACACATGAGCATTCAGATCATATCAAGGGAGTTGGTGTTCTAGCTCGCAAATATAACCTTGAT
ATTTACGCCAATTCAAAAACATGGCAAATGATTGATCACCGTCAGATGCTTGGAAAGATTGATGTGGCACAAAAACACGT
CTTTGAAAGAGATAAGATGATGACTTTCGGGGATTTAGATGTCGAGAGTTTCGGTGTTAGCCACGACGCTGCTGATCCTC
AATTTTACCGTTTTATGAAAGATGGGAAATCCTTTGTCATGTTAACAGATACAGGTTATGTTAGTGATAGGCTTTCTGGT
GTCATCGAGAACGCTGATGCTTACTTGATTGAATCCAATCATGATATCGAAATTCTAAGGTCAGGTTCTTACCCTTGGAG
TCTCAAACAGCGAATCTTATCGGATCAAGGTCATTTGTCAAATGAAGACGGTGCGGCAGCTATGATACGCAGTATGGGAA
ATAAGACCAAAAAAATCTTTTTGGGGCATTTAAGTAAAGAAAATAATATCAAAGAATTAGCGCACATGACCATGGAAAAT
CAGTTAGCAATGGCAGATTTGCCTTTAGGGTCACAATTTACTGTTTTTGATACCTCACCTGATACTGCCTGTCCTTTATC
GGATATCTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0MZV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

72.862

100

0.729

Multiple sequence alignment