Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMO_RS05970 Genome accession   NC_013016
Coordinates   1124199..1124876 (-) Length   225 a.a.
NCBI ID   WP_015815618.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119199..1129876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS05955 (NMO_1087) hflX 1120785..1121963 (-) 1179 WP_015815617.1 GTPase HflX -
  NMO_RS05960 (NMO_1088) - 1121968..1123248 (-) 1281 WP_002217115.1 CAP domain-containing protein -
  NMO_RS14885 - 1123250..1123378 (+) 129 WP_009347251.1 hypothetical protein -
  NMO_RS05965 (NMO_1089) - 1123401..1124126 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMO_RS05970 (NMO_1090) ysxA/radC 1124199..1124876 (-) 678 WP_015815618.1 RadC family protein Machinery gene
  NMO_RS05975 (NMO_1091) gshA 1124999..1126348 (-) 1350 WP_002213445.1 glutamate--cysteine ligase -
  NMO_RS05980 (NMO_1092) leuC 1126608..1128017 (+) 1410 WP_015815619.1 3-isopropylmalate dehydratase large subunit -
  NMO_RS05985 (NMO_1093) - 1128114..1128368 (+) 255 WP_048816110.1 hypothetical protein -
  NMO_RS05990 (NMO_1094) leuD 1128430..1129071 (+) 642 WP_002240543.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24983.76 Da        Isoelectric Point: 5.1540

>NTDB_id=31541 NMO_RS05970 WP_015815618.1 1124199..1124876(-) (ysxA/radC) [Neisseria meningitidis alpha14]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQEEITLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=31541 NMO_RS05970 WP_015815618.1 1124199..1124876(-) (ysxA/radC) [Neisseria meningitidis alpha14]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAAGAAATCACCTTATCCGATCCCGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGGGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCTTTGGACGAGTATGCGGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTTGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment