Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   TFGA2_RS07610 Genome accession   NZ_CP032398
Coordinates   1304774..1305169 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-A2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299774..1310169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGA2_RS07560 (TFGA2_01340) - 1300043..1300315 (-) 273 WP_003691603.1 ACT domain-containing protein -
  TFGA2_RS07565 (TFGA2_01341) - 1300440..1301177 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  TFGA2_RS07575 (TFGA2_01342) prmB 1301315..1302214 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  TFGA2_RS13295 - 1302313..1302510 (-) 198 WP_162894438.1 hypothetical protein -
  TFGA2_RS13300 - 1302546..1303031 (+) 486 WP_225577457.1 hypothetical protein -
  TFGA2_RS07590 (TFGA2_01344) - 1303171..1303823 (+) 653 Protein_1332 IS1595 family transposase -
  TFGA2_RS07595 (TFGA2_01346) - 1304097..1304423 (+) 327 Protein_1333 hypothetical protein -
  TFGA2_RS07610 (TFGA2_01347) comE 1304774..1305169 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  TFGA2_RS13985 - 1305274..1305390 (-) 117 Protein_1335 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=315396 TFGA2_RS07610 WP_003703428.1 1304774..1305169(-) (comE) [Neisseria gonorrhoeae strain TFG-A2]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=315396 TFGA2_RS07610 WP_003703428.1 1304774..1305169(-) (comE) [Neisseria gonorrhoeae strain TFG-A2]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment