Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E5F08_RS20965 Genome accession   NZ_CP038496
Coordinates   4238222..4238959 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157:H7 strain TT12A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4233222..4243959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5F08_RS20950 (E5F08_21625) clpC 4233676..4236249 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  E5F08_RS20955 (E5F08_21630) yfiH 4236379..4237110 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  E5F08_RS20960 (E5F08_21635) rluD 4237107..4238087 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E5F08_RS20965 (E5F08_21640) comL 4238222..4238959 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E5F08_RS20970 (E5F08_21645) raiA 4239230..4239571 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E5F08_RS20975 (E5F08_21650) pheL 4239675..4239722 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E5F08_RS20980 (E5F08_21655) pheA 4239821..4240981 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E5F08_RS20985 (E5F08_21660) tyrA 4241024..4242145 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E5F08_RS20990 (E5F08_21665) aroF 4242156..4243226 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E5F08_RS20995 (E5F08_21670) yfiL 4243436..4243801 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=315334 E5F08_RS20965 WP_000197686.1 4238222..4238959(+) (comL) [Escherichia coli O157:H7 strain TT12A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=315334 E5F08_RS20965 WP_000197686.1 4238222..4238959(+) (comL) [Escherichia coli O157:H7 strain TT12A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376