Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D4A37_RS21645 Genome accession   NZ_CP032365
Coordinates   4180791..4182530 (-) Length   579 a.a.
NCBI ID   WP_000947735.1    Uniprot ID   A0A2C4ZIL7
Organism   Bacillus wiedmannii strain SR52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4175791..4187530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS21610 - 4176028..4176261 (+) 234 WP_001190196.1 DUF2627 domain-containing protein -
  D4A37_RS21615 - 4176310..4177038 (-) 729 WP_064459836.1 glycerophosphodiester phosphodiesterase -
  D4A37_RS21620 - 4177089..4177235 (+) 147 WP_001247671.1 YycC family protein -
  D4A37_RS21625 - 4177475..4178038 (-) 564 WP_064472661.1 PRK06770 family protein -
  D4A37_RS21630 spo0A 4178292..4179086 (-) 795 WP_033658812.1 sporulation transcription factor Spo0A Regulator
  D4A37_RS21640 spoIVB 4179374..4180672 (-) 1299 WP_002107735.1 SpoIVB peptidase -
  D4A37_RS21645 recN 4180791..4182530 (-) 1740 WP_000947735.1 DNA repair protein RecN Machinery gene
  D4A37_RS21650 argR 4182796..4183245 (-) 450 WP_001032581.1 arginine repressor ArgR -
  D4A37_RS21655 - 4183388..4184227 (-) 840 WP_001274750.1 TlyA family RNA methyltransferase -
  D4A37_RS21660 dxs 4184231..4186123 (-) 1893 WP_000366437.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D4A37_RS21665 ispA 4186427..4187317 (-) 891 WP_000150358.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65695.79 Da        Isoelectric Point: 4.8574

>NTDB_id=315204 D4A37_RS21645 WP_000947735.1 4180791..4182530(-) (recN) [Bacillus wiedmannii strain SR52]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLRISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=315204 D4A37_RS21645 WP_000947735.1 4180791..4182530(-) (recN) [Bacillus wiedmannii strain SR52]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTCACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATCTATTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAGGCGGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTGCGAATTTCTAATTTTGAAAAAATTTATAAAGCATTAGGCGATGCATATCGCTCATTAAGCGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTTTATCAAGA
AAATCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAAGCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTTGAGGGTGCCCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C4ZIL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment