Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D4A37_RS21630 Genome accession   NZ_CP032365
Coordinates   4178292..4179086 (-) Length   264 a.a.
NCBI ID   WP_033658812.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain SR52     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4173292..4184086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS21605 - 4173819..4175891 (-) 2073 WP_048565700.1 sigma-54-dependent Fis family transcriptional regulator -
  D4A37_RS21610 - 4176028..4176261 (+) 234 WP_001190196.1 DUF2627 domain-containing protein -
  D4A37_RS21615 - 4176310..4177038 (-) 729 WP_064459836.1 glycerophosphodiester phosphodiesterase -
  D4A37_RS21620 - 4177089..4177235 (+) 147 WP_001247671.1 YycC family protein -
  D4A37_RS21625 - 4177475..4178038 (-) 564 WP_064472661.1 PRK06770 family protein -
  D4A37_RS21630 spo0A 4178292..4179086 (-) 795 WP_033658812.1 sporulation transcription factor Spo0A Regulator
  D4A37_RS21640 spoIVB 4179374..4180672 (-) 1299 WP_002107735.1 SpoIVB peptidase -
  D4A37_RS21645 recN 4180791..4182530 (-) 1740 WP_000947735.1 DNA repair protein RecN Machinery gene
  D4A37_RS21650 argR 4182796..4183245 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29390.02 Da        Isoelectric Point: 6.7576

>NTDB_id=315203 D4A37_RS21630 WP_033658812.1 4178292..4179086(-) (spo0A) [Bacillus wiedmannii strain SR52]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLNDKQPDVLVLDIIMPHLDGLAVLEKMRNIERLRQP
SVIMLTAFGQEDVTTKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=315203 D4A37_RS21630 WP_033658812.1 4178292..4179086(-) (spo0A) [Bacillus wiedmannii strain SR52]
GTGGAGAAAATTAAAGTCTGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTACGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAATGATAAGCAGCCGGATGTACTTG
TTTTAGACATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGAAATATTGAAAGGCTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGACAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACTACAATAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATCGGTGTACCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTCGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCTATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.15

100

0.811

Multiple sequence alignment