Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D3Z18_RS05375 Genome accession   NZ_CP032316
Coordinates   952622..953395 (+) Length   257 a.a.
NCBI ID   WP_002918419.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 947622..958395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS05360 (D3Z18_05360) - 948471..950405 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  D3Z18_RS05365 (D3Z18_05365) ilvC 950524..951546 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  D3Z18_RS05370 (D3Z18_05370) - 951550..952632 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  D3Z18_RS05375 (D3Z18_05375) dprA 952622..953395 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  D3Z18_RS05380 (D3Z18_05380) ruvX 953392..953775 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX -
  D3Z18_RS05385 (D3Z18_05385) - 953804..954643 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  D3Z18_RS05390 (D3Z18_05390) msrA 954819..955316 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  D3Z18_RS05395 (D3Z18_05395) ppa 955358..955876 (-) 519 WP_002867724.1 inorganic diphosphatase -
  D3Z18_RS05400 (D3Z18_05400) adk 955886..956464 (-) 579 WP_002859580.1 adenylate kinase -
  D3Z18_RS05405 (D3Z18_05405) aspS 956461..958212 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28919.74 Da        Isoelectric Point: 7.7211

>NTDB_id=314980 D3Z18_RS05375 WP_002918419.1 952622..953395(+) (dprA) [Campylobacter jejuni subsp. jejuni strain HPC5]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=314980 D3Z18_RS05375 WP_002918419.1 952622..953395(+) (dprA) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment