Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E4Z89_RS05800 Genome accession   NZ_CP038453
Coordinates   1196412..1197149 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC-129     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191412..1202149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z89_RS05770 (E4Z89_05800) yfiL 1191571..1191936 (-) 366 WP_024166617.1 DUF2799 domain-containing protein -
  E4Z89_RS05775 (E4Z89_05805) aroF 1192145..1193215 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E4Z89_RS05780 (E4Z89_05810) tyrA 1193226..1194347 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E4Z89_RS05785 (E4Z89_05815) pheA 1194390..1195550 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  E4Z89_RS05790 (E4Z89_05820) pheL 1195649..1195696 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E4Z89_RS05795 (E4Z89_05825) raiA 1195800..1196141 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E4Z89_RS05800 (E4Z89_05830) comL 1196412..1197149 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E4Z89_RS05805 (E4Z89_05835) rluD 1197284..1198264 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E4Z89_RS05810 (E4Z89_05840) yfiH 1198261..1198992 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  E4Z89_RS05815 (E4Z89_05845) clpC 1199122..1201695 (+) 2574 WP_137088589.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=314968 E4Z89_RS05800 WP_000197686.1 1196412..1197149(-) (comL) [Escherichia coli strain EC-129]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=314968 E4Z89_RS05800 WP_000197686.1 1196412..1197149(-) (comL) [Escherichia coli strain EC-129]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376