Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   D3Z90_RS24710 Genome accession   NZ_CP032311
Coordinates   5389099..5389509 (-) Length   136 a.a.
NCBI ID   WP_136478496.1    Uniprot ID   -
Organism   Pseudomonas sp. DG56-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5384099..5394509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z90_RS24695 - 5386076..5388121 (-) 2046 WP_136478493.1 methyl-accepting chemotaxis protein -
  D3Z90_RS24700 - 5388137..5388676 (-) 540 WP_371922337.1 chemotaxis protein CheW -
  D3Z90_RS24705 pilH 5388688..5389053 (-) 366 WP_136478495.1 twitching motility response regulator PilH -
  D3Z90_RS24710 pilG 5389099..5389509 (-) 411 WP_136478496.1 twitching motility response regulator PilG Regulator
  D3Z90_RS24715 gshB 5389821..5390774 (+) 954 WP_136478497.1 glutathione synthase -
  D3Z90_RS24720 - 5390884..5391789 (+) 906 WP_136478498.1 energy transducer TonB -
  D3Z90_RS24725 - 5391852..5392421 (+) 570 WP_136478499.1 YqgE/AlgH family protein -
  D3Z90_RS24730 ruvX 5392421..5392855 (+) 435 WP_136478500.1 Holliday junction resolvase RuvX -
  D3Z90_RS24735 pyrR 5392910..5393428 (+) 519 WP_136478501.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  D3Z90_RS24740 - 5393441..5394445 (+) 1005 WP_038997542.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15018.38 Da        Isoelectric Point: 6.0836

>NTDB_id=314953 D3Z90_RS24710 WP_136478496.1 5389099..5389509(-) (pilG) [Pseudomonas sp. DG56-2]
MEQPRAALKVMVIDDSKTIRRTAQMLLSEVGCEVITATDGFDALAKIVDQHPQIIFVDVLMPRLDGYQTCALIKHNSAFK
DTPVILLSSRDGLFDKARGRVVGSDLFLTKPFSKEELLDAIRAHVPGFAAEEQHAP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=314953 D3Z90_RS24710 WP_136478496.1 5389099..5389509(-) (pilG) [Pseudomonas sp. DG56-2]
ATGGAACAGCCCCGCGCGGCACTCAAAGTGATGGTGATCGATGACTCCAAGACGATTCGCCGCACCGCTCAGATGCTGCT
CAGTGAAGTAGGGTGCGAGGTCATCACGGCCACCGACGGCTTCGACGCGCTGGCCAAAATTGTCGACCAGCATCCACAAA
TCATCTTCGTCGATGTACTGATGCCGCGACTCGATGGTTACCAGACTTGCGCCTTGATCAAGCACAACAGCGCCTTCAAG
GATACGCCAGTGATTCTCCTGTCTTCACGCGACGGCTTGTTCGACAAGGCCAGGGGTCGCGTGGTTGGCTCTGATCTATT
TTTGACCAAACCTTTCAGCAAGGAAGAGCTGCTGGATGCAATCAGGGCCCATGTGCCCGGGTTCGCCGCAGAAGAACAAC
ACGCACCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.6

91.912

0.64

Multiple sequence alignment