Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | D3Z87_RS13450 | Genome accession | NZ_CP032310 |
| Coordinates | 2552279..2552614 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain WB800N | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2547279..2557614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3Z87_RS13430 (D3Z87_13345) | gcvT | 2547871..2548959 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| D3Z87_RS13435 (D3Z87_13350) | hepAA | 2549401..2551074 (+) | 1674 | WP_004398544.1 | SNF2-related protein | - |
| D3Z87_RS13440 (D3Z87_13355) | yqhG | 2551095..2551889 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| D3Z87_RS13445 (D3Z87_13360) | sinI | 2552072..2552245 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| D3Z87_RS13450 (D3Z87_13365) | sinR | 2552279..2552614 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| D3Z87_RS13455 (D3Z87_13370) | tasA | 2552707..2553492 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| D3Z87_RS13460 (D3Z87_13375) | sipW | 2553556..2554128 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| D3Z87_RS13465 (D3Z87_13380) | tapA | 2554112..2554873 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| D3Z87_RS13470 (D3Z87_13385) | yqzG | 2555145..2555471 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| D3Z87_RS13475 (D3Z87_13390) | spoIITA | 2555513..2555692 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| D3Z87_RS13480 (D3Z87_13395) | comGG | 2555763..2556137 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| D3Z87_RS13485 (D3Z87_13400) | comGF | 2556138..2556521 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| D3Z87_RS13490 (D3Z87_13405) | comGE | 2556547..2556894 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| D3Z87_RS13495 (D3Z87_13410) | comGD | 2556878..2557309 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| D3Z87_RS13500 (D3Z87_13415) | comGC | 2557299..2557595 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=314897 D3Z87_RS13450 WP_003226345.1 2552279..2552614(+) (sinR) [Bacillus subtilis strain WB800N]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=314897 D3Z87_RS13450 WP_003226345.1 2552279..2552614(+) (sinR) [Bacillus subtilis strain WB800N]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |