Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D3Z87_RS13495 Genome accession   NZ_CP032310
Coordinates   2556878..2557309 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain WB800N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551878..2562309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z87_RS13445 (D3Z87_13360) sinI 2552072..2552245 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D3Z87_RS13450 (D3Z87_13365) sinR 2552279..2552614 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D3Z87_RS13455 (D3Z87_13370) tasA 2552707..2553492 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  D3Z87_RS13460 (D3Z87_13375) sipW 2553556..2554128 (-) 573 WP_003246088.1 signal peptidase I SipW -
  D3Z87_RS13465 (D3Z87_13380) tapA 2554112..2554873 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  D3Z87_RS13470 (D3Z87_13385) yqzG 2555145..2555471 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D3Z87_RS13475 (D3Z87_13390) spoIITA 2555513..2555692 (-) 180 WP_003230176.1 YqzE family protein -
  D3Z87_RS13480 (D3Z87_13395) comGG 2555763..2556137 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  D3Z87_RS13485 (D3Z87_13400) comGF 2556138..2556521 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  D3Z87_RS13490 (D3Z87_13405) comGE 2556547..2556894 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  D3Z87_RS13495 (D3Z87_13410) comGD 2556878..2557309 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  D3Z87_RS13500 (D3Z87_13415) comGC 2557299..2557595 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D3Z87_RS13505 (D3Z87_13420) comGB 2557609..2558646 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  D3Z87_RS13510 (D3Z87_13425) comGA 2558633..2559703 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D3Z87_RS13520 (D3Z87_13435) corA 2560115..2561068 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=314901 D3Z87_RS13495 WP_004398628.1 2556878..2557309(-) (comGD) [Bacillus subtilis strain WB800N]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=314901 D3Z87_RS13495 WP_004398628.1 2556878..2557309(-) (comGD) [Bacillus subtilis strain WB800N]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment