Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E4T63_RS09370 Genome accession   NZ_CP038438
Coordinates   2059095..2059697 (+) Length   200 a.a.
NCBI ID   WP_007965550.1    Uniprot ID   A0A5C4KT43
Organism   Pseudomonas fluorescens strain LBUM677     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2054095..2064697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS09350 (E4T63_09350) - 2054349..2055098 (-) 750 WP_097087634.1 transporter substrate-binding domain-containing protein -
  E4T63_RS09355 (E4T63_09355) dnaX 2055242..2057323 (+) 2082 WP_135295316.1 DNA polymerase III subunit gamma/tau -
  E4T63_RS09360 (E4T63_09360) - 2057391..2057729 (+) 339 WP_003223337.1 YbaB/EbfC family nucleoid-associated protein -
  E4T63_RS09365 (E4T63_09365) - 2057994..2059028 (+) 1035 WP_135295317.1 NADP-dependent oxidoreductase -
  E4T63_RS09370 (E4T63_09370) recR 2059095..2059697 (+) 603 WP_007965550.1 recombination mediator RecR Machinery gene
  E4T63_RS09375 (E4T63_09375) - 2059899..2061047 (+) 1149 WP_135295318.1 acyl-CoA dehydrogenase family protein -
  E4T63_RS09380 (E4T63_09380) - 2061168..2061716 (-) 549 WP_003223345.1 adenine phosphoribosyltransferase -
  E4T63_RS09385 (E4T63_09385) fnr 2061795..2062529 (-) 735 WP_003223347.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  E4T63_RS09390 (E4T63_09390) - 2062685..2063167 (+) 483 WP_027613260.1 hypothetical protein -
  E4T63_RS09395 (E4T63_09395) hemN 2063164..2064546 (-) 1383 WP_003223350.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21460.67 Da        Isoelectric Point: 5.9987

>NTDB_id=314872 E4T63_RS09370 WP_007965550.1 2059095..2059697(+) (recR) [Pseudomonas fluorescens strain LBUM677]
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGHCRQCRTLTEDDLCPQCADTRRDDT
LLCVVEGPMDVYAVEQTGFRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIEEAGTFTEVILATNPTVEGEATAHYIAQLL
ANKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRKPISL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=314872 E4T63_RS09370 WP_007965550.1 2059095..2059697(+) (recR) [Pseudomonas fluorescens strain LBUM677]
ATGAGCTTCAGCCCTTTGATTCGCCAACTGATCGACGCCCTGCGCACTTTGCCGGGCGTGGGTCAGAAAACCGCCCAGCG
CATGGCGTTGCAGTTGCTCGAGCGTGATCGCAGCGGCGGCACGCGCCTGGCCCAGGCCTTGAGCCAGGCCATGGAAGGGG
TGGGGCACTGCCGTCAGTGCCGCACGCTGACCGAAGACGATCTGTGCCCGCAATGCGCCGACACGCGCCGCGACGACACG
CTGCTGTGCGTGGTGGAGGGGCCGATGGACGTGTATGCGGTGGAGCAAACGGGTTTCCGTGGGCGCTACTTCGTGCTCAA
GGGCCACCTGTCGCCGCTCGACGGTCTGGGGCCGGAAGCTATCGGTATTCCGCAGCTGATGGCGCGTATTGAAGAGGCGG
GCACCTTTACCGAAGTCATCCTCGCCACCAACCCGACGGTGGAAGGTGAAGCTACTGCGCATTACATCGCTCAACTTCTG
GCCAACAAAGGCTTGATCGCCTCGCGGATTGCCCACGGTGTGCCGCTGGGTGGGGAGCTGGAGTTGGTGGATGGCGGGAC
ACTGGCGCATTCGTTTGCCGGGCGTAAGCCGATTTCCCTCTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(82-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4KT43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46

100

0.46
  recR Bacillus subtilis subsp. subtilis str. 168

46.193

98.5

0.455
  recR Streptococcus pneumoniae R6

36.735

98

0.36