Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CDG62_RS18420 Genome accession   NZ_CP032286
Coordinates   3253979..3255133 (+) Length   384 a.a.
NCBI ID   WP_087528680.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248979..3260133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS18405 (CDG62_18410) - 3250688..3252733 (-) 2046 WP_087528677.1 TonB-dependent copper receptor -
  CDG62_RS18410 (CDG62_18415) - 3252806..3253243 (-) 438 WP_087528678.1 DUF2946 family protein -
  CDG62_RS18415 (CDG62_18420) def 3253328..3253858 (-) 531 WP_087528679.1 peptide deformylase -
  CDG62_RS18420 (CDG62_18425) tsaP 3253979..3255133 (+) 1155 WP_087528680.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CDG62_RS18425 (CDG62_18430) dprA 3255156..3256289 (+) 1134 WP_087528681.1 DNA-processing protein DprA Machinery gene
  CDG62_RS18430 (CDG62_18435) - 3256335..3256904 (+) 570 WP_087528682.1 L-threonylcarbamoyladenylate synthase -
  CDG62_RS18435 (CDG62_18440) - 3257304..3258224 (-) 921 WP_087528683.1 DMT family transporter -
  CDG62_RS18440 (CDG62_18445) - 3258563..3259117 (+) 555 WP_087528684.1 hypothetical protein -
  CDG62_RS18445 (CDG62_18450) - 3259241..3259786 (+) 546 WP_087528685.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42266.16 Da        Isoelectric Point: 7.4353

>NTDB_id=314765 CDG62_RS18420 WP_087528680.1 3253979..3255133(+) (tsaP) [Acinetobacter sp. WCHA55]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGTGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHDGRPIIGKDEGDGCEGIIRRYTGGAKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTDGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPVNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=314765 CDG62_RS18420 WP_087528680.1 3253979..3255133(+) (tsaP) [Acinetobacter sp. WCHA55]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCACAGGCGTCATTTCAACAGCTCAAGCTGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACATTGTGGGATATCTCTAAACGTTTCCTAAATAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGCTTACTGATGTGTACTCA
TGACGGCCGTCCAATTATTGGTAAAGACGAGGGCGATGGCTGTGAAGGGATTATTCGTCGCTATACAGGTGGCGCTAAAC
TTCAACCTCAAGCACGTGTTGAATCCTTAAACAACGCTATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTCGGTGCTGCTGATCAACGGGTGATTGCGGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTACCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTATCCAACACATGCACAAGATGTGACTGATGGAGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCGGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCAGGTTAT
GTGTTCTCAGTTAGTCAAAAAGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAGTAAACTTGG
GCGCGAAACTTTCTCCCTCTGTTGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.664

Multiple sequence alignment