Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CDG62_RS17480 Genome accession   NZ_CP032286
Coordinates   3049567..3051789 (+) Length   740 a.a.
NCBI ID   WP_087527025.1    Uniprot ID   A0A385NCA6
Organism   Acinetobacter sp. WCHA55     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3044567..3056789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS17455 (CDG62_17460) lnt 3044995..3046554 (+) 1560 WP_087527021.1 apolipoprotein N-acyltransferase -
  CDG62_RS17460 (CDG62_17465) - 3046619..3046957 (-) 339 WP_087527022.1 tRNA-binding protein -
  CDG62_RS17465 (CDG62_17470) - 3047119..3047454 (-) 336 WP_087527023.1 hypothetical protein -
  CDG62_RS17470 (CDG62_17475) gspG 3047738..3048175 (-) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  CDG62_RS17475 (CDG62_17480) gspF 3048209..3049414 (-) 1206 WP_087527024.1 type II secretion system inner membrane protein GspF -
  CDG62_RS17480 (CDG62_17485) priA 3049567..3051789 (+) 2223 WP_087527025.1 primosomal protein N' Machinery gene
  CDG62_RS17485 (CDG62_17490) - 3051872..3053713 (+) 1842 WP_087527026.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CDG62_RS17490 (CDG62_17495) - 3053764..3054639 (+) 876 WP_087527027.1 Hsp33 family molecular chaperone HslO -
  CDG62_RS17495 (CDG62_17500) - 3054836..3055288 (+) 453 WP_087527028.1 DUF2147 domain-containing protein -
  CDG62_RS17500 (CDG62_17505) - 3055432..3056385 (+) 954 WP_087527029.1 DnaJ C-terminal domain-containing protein -
  CDG62_RS17505 (CDG62_17510) - 3056396..3056752 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84240.11 Da        Isoelectric Point: 8.8793

>NTDB_id=314756 CDG62_RS17480 WP_087527025.1 3049567..3051789(+) (priA) [Acinetobacter sp. WCHA55]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDTKVLSLLTWAAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCLLEAQDFKPQAMTLAQMPLTPNDEQKRAIQRILKARDSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEIQKRLDKKEQVLVFLNRRGYAPVLICESCGWQSKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHNELKPIGLGTAKVEENLQTLFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQNFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=314756 CDG62_RS17480 WP_087527025.1 3049567..3051789(+) (priA) [Acinetobacter sp. WCHA55]
ATGCCAGAGAACACACTTTCCACCACACCGAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAAAAACCACTCGATTTAGGCTTTAAACTCAAAGCTATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATACTAAAGTTTTAAGTTTATTGACATGGGCAGCACAATATTATCAATTTCCGATTGGTGA
AGTGATGCATGCCGCGTTACCTAGCTTTTTACGCCAAGGTAAGCCTTATAACCTATTGGCACGGATGTGGAAGCTGATTG
ATGACCATGCCGAAGACAAATTAAAGCGTTCTGAAAAACAACAAGATGCATATAAAATTTTAAAGCTGCATCCTACAGGA
ACTTCCGAAAACATTTTAAATTTGGCTGGTATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAATG
CCTACTCGAAGCCCAAGACTTTAAACCGCAAGCCATGACGCTGGCGCAAATGCCACTCACGCCCAATGATGAACAAAAGA
GAGCCATTCAGCGTATTTTAAAAGCACGGGATAGCTACCATGCTTTTTTACTCGATGGTTTAACCGGTAGTGGTAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAGGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
TCCTCAAACAGTGAGTCGTTTTCAATCTCGTTTTCACTGTCATATTGCGCTATTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCATGGCAAAGTGCGCAAACAGGTAAAGCCTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCCCTT
CCACATCTGGGTTTGATTGTCTTAGATGAAGAGCATGATTTATCTTTTAAGCAACAAGAGGGCTTCCGCTACCATGCTCG
TGATGTGGCCTTATACCGTGCACACTTAGAAAACTGTCCAATTATCCTTGGTTCTGCAACGCCCAGTATCGACAGTTATG
CACTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTAGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATTGATCTGAAAGTGGCACAAAAACAAAATGGTATCAGCCAACAGCTGATTCATGAAATACAGAAGCGCTTAGACAAAAA
AGAACAGGTCTTGGTTTTTTTAAACCGTCGAGGCTATGCGCCCGTGTTAATCTGCGAGAGTTGTGGCTGGCAATCAAAAT
GCCCTCATTGCGATGCCAATTTTACCGTACATCGACAGCCCTACCAGCATTTACACTGTCACCACTGTGGCACCATCCAC
CGTATGCCTGAACACTGCCCGCAATGTCAACATAATGAACTGAAACCCATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAACACTGTTCCCAAATTTTGACGTCATTCGGGTTGATCGCGACTCCACCAGTCGGGTCGGTAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTAGTGGCAATTTTAGACATTGACTCAGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACAGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGACGCGGTGAGAAAAAAGGCGAAGTCTATTTACAAACTTTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTGGAGTCGGGCTATCGTAGCTTTGCCAAGCAAACACTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGTTGTGAATCCAAAGATCAAGAACTGAACCAAAACTTTTTACAAGAGCATGC
GCAAGCACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCAATTCCGGCGCCGATGGAGCGTAAAGCAGGTC
GCTATCAAGCACATATGGTACTACTGTCCAAAGACCGTGCACGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTAAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385NCA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.546

98.784

0.707

Multiple sequence alignment