Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | CDG62_RS10175 | Genome accession | NZ_CP032286 |
| Coordinates | 1513059..1513460 (+) | Length | 133 a.a. |
| NCBI ID | WP_087527184.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. WCHA55 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1508059..1518460
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG62_RS10145 (CDG62_10150) | kdsB | 1508862..1509623 (+) | 762 | WP_087527116.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| CDG62_RS10150 (CDG62_10155) | - | 1509643..1510626 (+) | 984 | WP_087527117.1 | DNA polymerase III subunit delta' C-terminal domain-containing protein | - |
| CDG62_RS10155 (CDG62_10160) | - | 1510641..1510982 (+) | 342 | WP_058869739.1 | PilZ domain-containing protein | - |
| CDG62_RS10160 (CDG62_10165) | - | 1511009..1511782 (+) | 774 | WP_087527118.1 | TatD family hydrolase | - |
| CDG62_RS10165 (CDG62_10170) | - | 1511828..1512442 (+) | 615 | WP_087527119.1 | TetR/AcrR family transcriptional regulator | - |
| CDG62_RS10170 (CDG62_10175) | - | 1512455..1513024 (+) | 570 | WP_087527120.1 | type II secretion system protein | - |
| CDG62_RS10175 (CDG62_10180) | xcpV | 1513059..1513460 (+) | 402 | WP_087527184.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| CDG62_RS10180 (CDG62_10185) | xcpW | 1513457..1514077 (+) | 621 | WP_087527121.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| CDG62_RS10185 (CDG62_10190) | gspK | 1514156..1515106 (+) | 951 | WP_087527122.1 | type II secretion system minor pseudopilin GspK | - |
| CDG62_RS10190 (CDG62_10195) | - | 1515229..1515825 (+) | 597 | WP_087527123.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| CDG62_RS10195 (CDG62_10200) | ung | 1515867..1516580 (+) | 714 | WP_087527124.1 | uracil-DNA glycosylase | - |
| CDG62_RS10200 (CDG62_10205) | - | 1516577..1517698 (+) | 1122 | WP_087527125.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CDG62_RS10205 (CDG62_10210) | tadA | 1517704..1518204 (+) | 501 | WP_087527126.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 14478.58 Da Isoelectric Point: 7.8583
>NTDB_id=314744 CDG62_RS10175 WP_087527184.1 1513059..1513460(+) (xcpV) [Acinetobacter sp. WCHA55]
MKCYFINPCSGFTLLEVMVALAIFATAAVALTKVGVQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQISQQ
GETWQIDKSAQATISANVQRVNVQVGLVNPETGKVDSGVTSLVFFNHRDGSQP
MKCYFINPCSGFTLLEVMVALAIFATAAVALTKVGVQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQISQQ
GETWQIDKSAQATISANVQRVNVQVGLVNPETGKVDSGVTSLVFFNHRDGSQP
Nucleotide
Download Length: 402 bp
>NTDB_id=314744 CDG62_RS10175 WP_087527184.1 1513059..1513460(+) (xcpV) [Acinetobacter sp. WCHA55]
ATGAAATGCTACTTCATTAATCCGTGCTCAGGATTTACGTTGCTGGAAGTGATGGTGGCGTTGGCTATTTTTGCCACGGC
AGCGGTCGCTTTAACTAAAGTGGGTGTGCAATATACTCAATCTACTGCACATGCGATTTTACGTACTAAGGCACAATTTG
TTGCCCTGAATGAAATTTCGATGATGGAAATTAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCAGCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATCAGTGCTAATGTCCAACGCGTCAATGTGCAAGTGGGCTT
GGTGAATCCTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
ATGAAATGCTACTTCATTAATCCGTGCTCAGGATTTACGTTGCTGGAAGTGATGGTGGCGTTGGCTATTTTTGCCACGGC
AGCGGTCGCTTTAACTAAAGTGGGTGTGCAATATACTCAATCTACTGCACATGCGATTTTACGTACTAAGGCACAATTTG
TTGCCCTGAATGAAATTTCGATGATGGAAATTAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCAGCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATCAGTGCTAATGTCCAACGCGTCAATGTGCAAGTGGGCTT
GGTGAATCCTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
72.269 |
89.474 |
0.647 |