Detailed information NTG0314745

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: CDG62_RS10180
• Genome accession: NZ_CP032286
• Coordinates: 1513457..1514077 (+)
• Length: 206 a.a.
• NCBI ID: WP_087527121.1
• Uniprot ID: A0A385N9P6
• Organism: Acinetobacter sp. WCHA55
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1508457..1519077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG62_RS10145 (CDG62_10150)	kdsB	1508862..1509623 (+)	762	WP_087527116.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CDG62_RS10150 (CDG62_10155)	-	1509643..1510626 (+)	984	WP_087527117.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
CDG62_RS10155 (CDG62_10160)	-	1510641..1510982 (+)	342	WP_058869739.1	PilZ domain-containing protein	-
CDG62_RS10160 (CDG62_10165)	-	1511009..1511782 (+)	774	WP_087527118.1	TatD family hydrolase	-
CDG62_RS10165 (CDG62_10170)	-	1511828..1512442 (+)	615	WP_087527119.1	TetR/AcrR family transcriptional regulator	-
CDG62_RS10170 (CDG62_10175)	-	1512455..1513024 (+)	570	WP_087527120.1	type II secretion system protein	-
CDG62_RS10175 (CDG62_10180)	xcpV	1513059..1513460 (+)	402	WP_087527184.1	type II secretion system minor pseudopilin GspI	Machinery gene
CDG62_RS10180 (CDG62_10185)	xcpW	1513457..1514077 (+)	621	WP_087527121.1	type II secretion system minor pseudopilin GspJ	Machinery gene
CDG62_RS10185 (CDG62_10190)	gspK	1514156..1515106 (+)	951	WP_087527122.1	type II secretion system minor pseudopilin GspK	-
CDG62_RS10190 (CDG62_10195)	-	1515229..1515825 (+)	597	WP_087527123.1	6-pyruvoyl trahydropterin synthase family protein	-
CDG62_RS10195 (CDG62_10200)	ung	1515867..1516580 (+)	714	WP_087527124.1	uracil-DNA glycosylase	-
CDG62_RS10200 (CDG62_10205)	-	1516577..1517698 (+)	1122	WP_087527125.1	enoyl-CoA hydratase/isomerase family protein	-
CDG62_RS10205 (CDG62_10210)	tadA	1517704..1518204 (+)	501	WP_087527126.1	tRNA adenosine(34) deaminase TadA	-
CDG62_RS10210 (CDG62_10215)	-	1518280..1518711 (+)	432	WP_087527127.1	SRPBCC family protein	-

Sequence

Protein

• Length: 206 a.a.
• Molecular weight: 23672.39 Da
• Isoelectric Point: 8.2913

>NTDB_id=314745 CDG62_RS10180 WP_087527121.1 1513457..1514077(+) (xcpW) [Acinetobacter sp. WCHA55]
MKKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLSQLQEAYQQVLRDTVQIVPITANVAGQIQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQIGHDQPETSVLMESVDQFQVMVLNPNEMAQWP
KVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

• Length: 621 bp

>NTDB_id=314745 CDG62_RS10180 WP_087527121.1 1513457..1514077(+) (xcpW) [Acinetobacter sp. WCHA55]
ATGAAAAAACGCTCAGGCTTTACTTTGGTCGAGTTATTGGTGGCAATCGCTATTTTTGCTGTACTTTCAGCTTTGGGGTG
GAAGGTTTTTGATTATCTAATCAAGATTAAAGAACGCAACACTCAACATGAACAGCGCTTAAGTCAGCTACAGGAAGCAT
ATCAACAAGTGTTACGTGACACTGTGCAAATTGTTCCAATTACTGCCAATGTTGCGGGGCAAATTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTAACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAGGGCATACCGCCTGAAGAGCGAGT
GGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAATAGGTCATGACCAAC
CTGAAACCAGTGTCTTAATGGAGTCGGTCGATCAATTTCAAGTGATGGTGCTCAATCCAAATGAAATGGCACAATGGCCT
AAGGTAGCATTGAGTGAAAATGATGTGACTCAAGCAAAAATACTACCGCGTGGTTTAAAAATAAACCTCACCGTCAATGA
GGTGAGTTATGAATGGGTGTTTAGTCTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (59-188)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

3D structure

• AlphaFold DB: A0A385N9P6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	57.214	97.573	0.558