Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CDG62_RS04605 Genome accession   NZ_CP032286
Coordinates   393235..393882 (-) Length   215 a.a.
NCBI ID   WP_087527368.1    Uniprot ID   A0A385N6S3
Organism   Acinetobacter sp. WCHA55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388235..398882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS04570 (CDG62_04575) mlaE 388557..389336 (+) 780 WP_087527362.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  CDG62_RS04575 (CDG62_04580) - 389336..390010 (+) 675 WP_087527363.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CDG62_RS04580 (CDG62_04585) - 390031..390666 (+) 636 WP_087527364.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  CDG62_RS04585 (CDG62_04590) - 390678..390965 (+) 288 WP_087527365.1 STAS domain-containing protein -
  CDG62_RS04590 (CDG62_04595) - 391068..392081 (-) 1014 WP_086208973.1 CorA family divalent cation transporter -
  CDG62_RS04595 (CDG62_04600) - 392234..392833 (+) 600 WP_087527366.1 TIGR00730 family Rossman fold protein -
  CDG62_RS04600 (CDG62_04605) - 392830..393234 (+) 405 WP_087527367.1 NUDIX hydrolase -
  CDG62_RS04605 (CDG62_04610) comF 393235..393882 (-) 648 WP_087527368.1 ComF family protein Machinery gene
  CDG62_RS04610 (CDG62_04615) recG 393869..395914 (-) 2046 WP_087527369.1 ATP-dependent DNA helicase RecG -
  CDG62_RS04615 (CDG62_04620) - 395948..396763 (+) 816 WP_087527370.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24832.97 Da        Isoelectric Point: 9.2019

>NTDB_id=314735 CDG62_RS04605 WP_087527368.1 393235..393882(-) (comF) [Acinetobacter sp. WCHA55]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHAVCLDCWQQLPLHPQTIEKQALSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIQQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLELEHLGCHKVSAACIAYAQE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=314735 CDG62_RS04605 WP_087527368.1 393235..393882(-) (comF) [Acinetobacter sp. WCHA55]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
CCGTGCAGATCTGCATGCGGTCTGTCTGGACTGCTGGCAACAGCTTCCTCTGCATCCACAAACCATTGAAAAGCAAGCGT
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTGATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAACCTTTACTTTCAGGCATTCTTCAGCAAATACGCTTACCTAAAGTGCAAGCAATTGTTCCGATGCCGATTTCGAG
CCAACGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGCTAAATGTTCCCATTT
GGCAACCTGTGATTCGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATCAAATTCAACAACAG
TTTAAAATTGATCCACAGCAACGCCAATATGCAAAACGTTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCCCTGACTTTAGAACTTGAACACTTAGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTACGCAC
AGGAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385N6S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.976

98.14

0.54
  comF Acinetobacter baumannii D1279779

54.976

98.14

0.54

Multiple sequence alignment