Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BEN74_RS12830 Genome accession   NZ_CP032279
Coordinates   2352289..2352924 (-) Length   211 a.a.
NCBI ID   WP_068909615.1    Uniprot ID   A0A3B7PTS2
Organism   Acinetobacter sp. WCHAc010034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2347289..2357924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS12795 (BEN74_12795) mlaE 2347587..2348366 (+) 780 WP_068909630.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BEN74_RS12800 (BEN74_12800) - 2348366..2349046 (+) 681 WP_068909627.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BEN74_RS12805 (BEN74_12805) - 2349067..2349702 (+) 636 WP_068909623.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BEN74_RS12810 (BEN74_12810) - 2349715..2350002 (+) 288 WP_068909621.1 STAS domain-containing protein -
  BEN74_RS12815 (BEN74_12815) - 2350098..2351111 (-) 1014 WP_068909619.1 CorA family divalent cation transporter -
  BEN74_RS12820 (BEN74_12820) - 2351266..2351862 (+) 597 WP_068909926.1 TIGR00730 family Rossman fold protein -
  BEN74_RS12825 (BEN74_12825) - 2351859..2352269 (+) 411 WP_068909617.1 NUDIX hydrolase -
  BEN74_RS12830 (BEN74_12830) comF 2352289..2352924 (-) 636 WP_068909615.1 ComF family protein Machinery gene
  BEN74_RS12835 (BEN74_12835) recG 2352911..2354956 (-) 2046 WP_068909612.1 ATP-dependent DNA helicase RecG -
  BEN74_RS12840 (BEN74_12840) - 2354989..2355798 (+) 810 WP_068909610.1 NAD-dependent epimerase/dehydratase family protein -
  BEN74_RS12845 (BEN74_12845) - 2356074..2356532 (+) 459 WP_162898189.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24222.37 Da        Isoelectric Point: 9.7970

>NTDB_id=314719 BEN74_RS12830 WP_068909615.1 2352289..2352924(-) (comF) [Acinetobacter sp. WCHAc010034]
MPMFSRILQQAKGLIQSLQPCQLCHADTQHRHNVCADCWNSLPWLKSPVLRQEMQVLAACQYAYPLDRIIQQFKYEQQLQ
YRPLLSGLLKNLRYPKVHAIVPMPVSLERLNQRGYNQSLLLAKDLAQHLQLPVWQPVQRLKQHAQKGLSRLERLEGIQQQ
FIIAAQPKAHYRKVLIVDDVVTTGSSLHALKQSLEQLGCRQIHAVCLAAAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=314719 BEN74_RS12830 WP_068909615.1 2352289..2352924(-) (comF) [Acinetobacter sp. WCHAc010034]
ATGCCTATGTTTAGCCGCATTCTGCAGCAGGCCAAGGGCTTAATCCAGTCCCTGCAGCCCTGCCAGTTGTGCCATGCTGA
TACCCAGCACCGGCATAATGTCTGCGCAGACTGCTGGAACAGCCTGCCTTGGCTGAAAAGCCCTGTCTTGCGTCAGGAAA
TGCAAGTCTTGGCCGCCTGCCAGTATGCCTACCCTCTCGACCGGATCATTCAGCAGTTCAAATATGAACAGCAGCTGCAG
TACCGGCCGCTGCTGTCCGGCCTGCTGAAAAATCTGCGCTATCCGAAAGTGCATGCCATTGTCCCCATGCCGGTCTCACT
GGAAAGGCTGAACCAGCGCGGCTATAACCAGTCGCTGCTGCTGGCCAAAGATTTGGCGCAGCATCTGCAGCTTCCCGTGT
GGCAGCCGGTGCAGCGCCTAAAGCAGCATGCGCAGAAAGGCCTCAGCCGGCTGGAACGGCTAGAAGGCATTCAGCAGCAG
TTCATTATTGCTGCCCAGCCTAAGGCGCATTACCGGAAAGTGCTGATTGTCGATGATGTAGTCACTACCGGCAGCTCCCT
CCATGCCTTAAAGCAGAGTCTGGAACAGCTCGGCTGCCGGCAGATTCATGCCGTGTGCTTAGCTGCTGCGGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7PTS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.914

93.365

0.569
  comF Acinetobacter baumannii D1279779

60.406

93.365

0.564

Multiple sequence alignment