Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BEN74_RS12040 Genome accession   NZ_CP032279
Coordinates   2181976..2182302 (+) Length   108 a.a.
NCBI ID   WP_171404927.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010034     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2176976..2187302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS12015 (BEN74_12015) hemC 2177650..2178567 (+) 918 WP_068911116.1 hydroxymethylbilane synthase -
  BEN74_RS12020 (BEN74_12020) - 2178572..2179351 (+) 780 WP_068911117.1 uroporphyrinogen-III synthase -
  BEN74_RS12025 (BEN74_12025) - 2179348..2180187 (+) 840 WP_068911118.1 hypothetical protein -
  BEN74_RS12030 (BEN74_12030) - 2180194..2181387 (+) 1194 WP_068911119.1 hypothetical protein -
  BEN74_RS12035 (BEN74_12035) - 2181399..2181827 (+) 429 WP_068911120.1 acyl-CoA thioesterase -
  BEN74_RS12040 (BEN74_12040) hns 2181976..2182302 (+) 327 WP_171404927.1 H-NS family nucleoid-associated regulatory protein Regulator
  BEN74_RS19460 - 2182321..2182539 (-) 219 WP_162898110.1 hypothetical protein -
  BEN74_RS12045 (BEN74_12045) gspN 2182472..2183215 (+) 744 WP_068911122.1 type II secretion system protein N -
  BEN74_RS12050 (BEN74_12050) - 2183215..2184051 (+) 837 WP_068911123.1 type II secretion system protein N -
  BEN74_RS12055 (BEN74_12055) gspD 2184091..2186325 (+) 2235 WP_068911124.1 type II secretion system secretin GspD -
  BEN74_RS12060 (BEN74_12060) - 2186415..2187035 (+) 621 WP_068911128.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12223.04 Da        Isoelectric Point: 8.4826

>NTDB_id=314717 BEN74_RS12040 WP_171404927.1 2181976..2182302(+) (hns) [Acinetobacter sp. WCHAc010034]
MMPDISNLSVEELKKLQVQAEALIASKKDQAVEDAYHQILEIAENVGLSIEQILEFGASKRKKATRKSVEPRYRSKANPE
DTWTGRGKQPRWLVAELEKGAKLESFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=314717 BEN74_RS12040 WP_171404927.1 2181976..2182302(+) (hns) [Acinetobacter sp. WCHAc010034]
ATCATGCCAGACATTAGTAATTTATCTGTTGAAGAGCTTAAAAAGCTGCAAGTTCAAGCCGAAGCATTAATTGCGTCTAA
AAAAGACCAGGCTGTTGAAGACGCTTATCATCAAATTTTGGAAATTGCGGAAAATGTCGGCCTCAGCATTGAGCAGATTC
TGGAATTCGGCGCCAGCAAGCGAAAAAAAGCCACGCGCAAATCTGTAGAGCCGCGCTACCGCAGCAAAGCCAATCCGGAA
GACACCTGGACTGGCCGCGGCAAGCAGCCGCGCTGGCTGGTGGCTGAGCTGGAAAAAGGCGCTAAGCTGGAAAGCTTCCT
GATCTGA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824

Multiple sequence alignment