Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   BEN74_RS03690 Genome accession   NZ_CP032279
Coordinates   485148..485591 (-) Length   147 a.a.
NCBI ID   WP_068912344.1    Uniprot ID   A0A3B7PQJ2
Organism   Acinetobacter sp. WCHAc010034     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480148..490591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS03660 (BEN74_03655) tadA 480403..480915 (-) 513 WP_068912355.1 tRNA adenosine(34) deaminase TadA -
  BEN74_RS03665 (BEN74_03660) - 480919..482043 (-) 1125 WP_068912353.1 enoyl-CoA hydratase/isomerase family protein -
  BEN74_RS03670 (BEN74_03665) ung 482040..482753 (-) 714 WP_068912351.1 uracil-DNA glycosylase -
  BEN74_RS03675 (BEN74_03670) - 482799..483395 (-) 597 WP_068912349.1 6-pyruvoyl trahydropterin synthase family protein -
  BEN74_RS03680 (BEN74_03675) gspK 483518..484477 (-) 960 WP_228200388.1 type II secretion system minor pseudopilin GspK -
  BEN74_RS03685 (BEN74_03680) xcpW 484474..485151 (-) 678 WP_068912346.1 type II secretion system minor pseudopilin GspJ Machinery gene
  BEN74_RS03690 (BEN74_03685) xcpV 485148..485591 (-) 444 WP_068912344.1 type II secretion system minor pseudopilin GspI Machinery gene
  BEN74_RS03695 (BEN74_03690) - 485588..486133 (-) 546 WP_068912342.1 pilus assembly FimT family protein -
  BEN74_RS03700 (BEN74_03695) - 486143..486757 (-) 615 WP_068912339.1 TetR/AcrR family transcriptional regulator -
  BEN74_RS03705 (BEN74_03700) - 486802..487575 (-) 774 WP_068912337.1 TatD family hydrolase -
  BEN74_RS03710 (BEN74_03705) - 487606..487947 (-) 342 WP_068912334.1 PilZ domain-containing protein -
  BEN74_RS03715 (BEN74_03710) - 487964..488947 (-) 984 WP_068912331.1 DNA polymerase III subunit delta' -
  BEN74_RS03720 (BEN74_03715) kdsB 488960..489721 (-) 762 WP_068912329.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15872.19 Da        Isoelectric Point: 7.8571

>NTDB_id=314693 BEN74_RS03690 WP_068912344.1 485148..485591(-) (xcpV) [Acinetobacter sp. WCHAc010034]
MKAEYLKRGFAPCAAAQQRSAHHCSGFTLLEVMVALAIFATAAIALSNVAMQYTQATANAVLRTKAQFVALNEIASMEMK
REWMSGTASKQITQQGETWQIDKSAQPTVSPDVQRIDVQVSLMNADTGKVEAGIASLVFFNAKAENS

Nucleotide


Download         Length: 444 bp        

>NTDB_id=314693 BEN74_RS03690 WP_068912344.1 485148..485591(-) (xcpV) [Acinetobacter sp. WCHAc010034]
ATGAAAGCTGAATACTTAAAGCGCGGTTTTGCGCCTTGCGCAGCGGCGCAGCAGCGTTCCGCCCATCACTGCTCAGGCTT
TACCCTGCTGGAAGTGATGGTGGCGCTGGCGATTTTCGCAACCGCGGCCATCGCCTTGAGCAATGTGGCGATGCAGTATA
CGCAGGCGACCGCCAATGCGGTTTTAAGAACCAAGGCGCAGTTTGTTGCGCTGAATGAAATCGCCTCAATGGAAATGAAG
CGGGAATGGATGAGCGGCACCGCGTCTAAGCAAATTACCCAGCAGGGCGAAACCTGGCAGATTGACAAATCCGCGCAGCC
GACCGTCAGCCCGGATGTGCAGCGCATTGATGTGCAGGTCAGCCTGATGAATGCTGATACCGGAAAAGTTGAGGCGGGCA
TCGCCAGTTTGGTGTTCTTCAACGCCAAAGCGGAAAACTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(23-46)

Type II secretion system (T2SS), protein I (T2SSI)

(63-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7PQJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

72.414

78.912

0.571

Multiple sequence alignment