Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D3P10_RS08685 Genome accession   NZ_CP032159
Coordinates   1747479..1747901 (-) Length   140 a.a.
NCBI ID   WP_119176412.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 22.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1742479..1752901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P10_RS08635 (D3P10_08635) - 1742600..1742857 (-) 258 WP_015365149.1 hypothetical protein -
  D3P10_RS08640 (D3P10_08640) - 1742854..1743393 (-) 540 WP_107529263.1 hypothetical protein -
  D3P10_RS08645 (D3P10_08645) - 1743394..1743585 (-) 192 WP_119176406.1 hypothetical protein -
  D3P10_RS08650 (D3P10_08650) - 1743586..1743993 (-) 408 WP_119176407.1 RusA family crossover junction endodeoxyribonuclease -
  D3P10_RS08655 (D3P10_08655) - 1744003..1744230 (-) 228 WP_119176408.1 DUF3269 family protein -
  D3P10_RS08660 (D3P10_08660) - 1744199..1744429 (-) 231 WP_107569208.1 hypothetical protein -
  D3P10_RS08665 (D3P10_08665) - 1744426..1745661 (-) 1236 WP_119176409.1 DnaB helicase C-terminal domain-containing protein -
  D3P10_RS08670 (D3P10_08670) - 1745654..1746013 (-) 360 WP_046467482.1 hypothetical protein -
  D3P10_RS08675 (D3P10_08675) - 1746013..1746798 (-) 786 WP_119176410.1 phage replisome organizer N-terminal domain-containing protein -
  D3P10_RS08680 (D3P10_08680) - 1746776..1747465 (-) 690 WP_119176411.1 putative HNHc nuclease -
  D3P10_RS08685 (D3P10_08685) ssbA 1747479..1747901 (-) 423 WP_119176412.1 single-stranded DNA-binding protein Machinery gene
  D3P10_RS08690 (D3P10_08690) - 1747901..1748536 (-) 636 WP_107529271.1 ERF family protein -
  D3P10_RS08695 (D3P10_08695) - 1748529..1748783 (-) 255 WP_047210494.1 DUF2483 family protein -
  D3P10_RS08700 (D3P10_08700) - 1748764..1749003 (-) 240 WP_119176413.1 hypothetical protein -
  D3P10_RS08705 (D3P10_08705) - 1749076..1749246 (-) 171 WP_107529273.1 hypothetical protein -
  D3P10_RS08710 (D3P10_08710) - 1749324..1749590 (+) 267 WP_107529274.1 hypothetical protein -
  D3P10_RS12715 - 1749587..1749712 (-) 126 WP_258076488.1 hypothetical protein -
  D3P10_RS08715 (D3P10_08715) - 1749715..1750032 (-) 318 WP_107529275.1 DUF771 domain-containing protein -
  D3P10_RS08720 (D3P10_08720) - 1750088..1750549 (+) 462 WP_058709597.1 hypothetical protein -
  D3P10_RS08725 (D3P10_08725) - 1750653..1751426 (-) 774 WP_119176414.1 phage antirepressor -
  D3P10_RS12585 - 1751606..1751767 (-) 162 WP_162889406.1 hypothetical protein -
  D3P10_RS12720 - 1751790..1751921 (-) 132 WP_259339244.1 hypothetical protein -
  D3P10_RS08730 (D3P10_08730) - 1751934..1752689 (-) 756 WP_058709596.1 phage antirepressor KilAC domain-containing protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15362.81 Da        Isoelectric Point: 6.2902

>NTDB_id=314257 D3P10_RS08685 WP_119176412.1 1747479..1747901(-) (ssbA) [Staphylococcus warneri strain 22.1]
MNTVNLIGNIVANPELKGQNSNVVNFRIAVQRQFKNKQTNEYETDFINCVAFGKTAEIIANNFTKGNKIGVTGSIQTGSY
ENKQGQKVFTTDVAVNNVTFVERKNNNQSNNQPQQQSGQAQSGNNPFDNGADISDDSLPF

Nucleotide


Download         Length: 423 bp        

>NTDB_id=314257 D3P10_RS08685 WP_119176412.1 1747479..1747901(-) (ssbA) [Staphylococcus warneri strain 22.1]
ATGAACACAGTAAATCTAATCGGAAATATAGTAGCTAACCCAGAACTAAAAGGTCAAAACAGTAACGTGGTTAATTTCAG
AATTGCAGTCCAACGACAATTTAAGAATAAACAAACGAACGAATACGAAACAGACTTCATCAATTGTGTTGCGTTTGGTA
AGACTGCAGAAATTATCGCTAATAACTTTACAAAAGGTAATAAAATCGGCGTAACTGGGTCTATTCAAACTGGAAGTTAC
GAGAATAAACAAGGTCAGAAAGTATTTACTACAGATGTTGCAGTTAACAATGTGACTTTCGTTGAACGTAAGAATAATAA
TCAATCTAACAACCAACCCCAACAACAAAGTGGACAAGCTCAAAGTGGTAACAATCCATTTGATAATGGTGCAGATATCT
CAGATGATTCGTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

39.535

100

0.486
  ssb Latilactobacillus sakei subsp. sakei 23K

40

100

0.486

Multiple sequence alignment