Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LL1196_RS09560 Genome accession   NZ_CP032148
Coordinates   1851335..1853140 (-) Length   601 a.a.
NCBI ID   WP_021165608.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 1196     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846335..1858140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL1196_RS09545 (LL1196_1928) alaS 1846687..1849305 (-) 2619 WP_205536401.1 alanine--tRNA ligase -
  LL1196_RS09550 (LL1196_1929) - 1849567..1850493 (-) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  LL1196_RS09555 (LL1196_1930) - 1850649..1851332 (-) 684 WP_021215824.1 O-methyltransferase -
  LL1196_RS09560 (LL1196_1931) pepF 1851335..1853140 (-) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  LL1196_RS09565 (LL1196_1932) coiA 1853215..1854198 (-) 984 WP_021211801.1 competence protein CoiA Machinery gene
  LL1196_RS09570 (LL1196_1933) - 1854273..1855358 (-) 1086 WP_014572240.1 YdcF family protein -
  LL1196_RS09575 (LL1196_1934) - 1855512..1856099 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  LL1196_RS09580 (LL1196_03540) - 1856138..1856335 (-) 198 WP_250638141.1 alpha/beta hydrolase -
  LL1196_RS09585 (LL1196_1935) - 1856568..1857989 (-) 1422 WP_011676727.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69994.70 Da        Isoelectric Point: 4.9158

>NTDB_id=314087 LL1196_RS09560 WP_021165608.1 1851335..1853140(-) (pepF) [Lactococcus cremoris strain 1196]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=314087 LL1196_RS09560 WP_021165608.1 1851335..1853140(-) (pepF) [Lactococcus cremoris strain 1196]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCGCTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAGCATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGATTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGGACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGAGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGCAATGATGAAAAGGAACGTTTTGCTCTTTTGAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTATTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCGCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.06

100

0.641

Multiple sequence alignment