Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LL1196_RS01805 Genome accession   NZ_CP032148
Coordinates   340096..340560 (+) Length   154 a.a.
NCBI ID   WP_080683475.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 1196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 337290..343069 340096..340560 within 0


Gene organization within MGE regions


Location: 337290..343069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL1196_RS01780 (LL1196_0332) - 337290..337844 (-) 555 WP_003132846.1 recombinase family protein -
  LL1196_RS01785 (LL1196_02785) - 338067..338228 (+) 162 Protein_338 IS982 family transposase -
  LL1196_RS01790 (LL1196_0333) - 338331..338996 (-) 666 WP_011676114.1 acetolactate decarboxylase -
  LL1196_RS01795 (LL1196_02790) - 339163..339243 (+) 81 Protein_340 IS6 family transposase -
  LL1196_RS01800 (LL1196_0334) - 339298..339978 (-) 681 WP_010890648.1 IS6-like element ISS1S family transposase -
  LL1196_RS01805 (LL1196_0335) coiA 340096..340560 (+) 465 WP_080683475.1 competence protein CoiA Machinery gene
  LL1196_RS01810 (LL1196_0336) pepF 340623..342428 (+) 1806 WP_031286803.1 oligoendopeptidase F Regulator
  LL1196_RS01815 (LL1196_0337) - 342431..342550 (+) 120 Protein_344 O-methyltransferase -
  LL1196_RS01820 (LL1196_02795) - 342537..343069 (-) 533 Protein_345 transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 18605.88 Da        Isoelectric Point: 9.6137

>NTDB_id=314064 LL1196_RS01805 WP_080683475.1 340096..340560(+) (coiA) [Lactococcus cremoris strain 1196]
MKTLIHEDLRGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPKWLKLQEKYYQRGENL
LNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIMKKQKKDMNE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=314064 LL1196_RS01805 WP_080683475.1 340096..340560(+) (coiA) [Lactococcus cremoris strain 1196]
TTGAAGACACTGATTCATGAAGATTTGCGTGGGAAAATTATTTATTTACAAGAAGAAATCCCTTTTGGTCAAGGACGACT
TATTGAGCAATTACGACTGCCTTTTTTATCACAAAAGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAAT
TTATTCGTCGGCAACTTTATTATTGTTCACCAAAATGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTG
TTGAATTTGACTTTTGAACGTTCTTTTATTGCGCCTTTGGGATTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTT
ACATAAATTTACTCAAATTAAGCAGAATATTAATCTATATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTA
AGGCAGTATATCCTCCCCGTTTCTATGCTATAATGAAAAAGCAGAAGAAGGATATGAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

69.536

98.052

0.682
  coiA Streptococcus mitis NCTC 12261

38.776

95.455

0.37

Multiple sequence alignment