Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D2M30_RS18545 Genome accession   NZ_CP032146
Coordinates   3636917..3637036 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain YP6     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3631917..3642036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS18520 (D2M30_18550) - 3633099..3633527 (-) 429 WP_016937596.1 DUF1934 domain-containing protein -
  D2M30_RS21085 - 3633681..3634159 (+) 479 Protein_3613 bacteriocin biosynthesis protein AlbG -
  D2M30_RS18530 (D2M30_18560) - 3634165..3635559 (-) 1395 WP_125123392.1 YncE family protein -
  D2M30_RS18540 (D2M30_18570) rapF 3635788..3636933 (+) 1146 WP_013353955.1 tetratricopeptide repeat protein Regulator
  D2M30_RS18545 (D2M30_18575) phrF 3636917..3637036 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D2M30_RS18550 (D2M30_18580) speB 3637150..3638022 (-) 873 WP_065522437.1 agmatinase -
  D2M30_RS18555 (D2M30_18585) speE 3638081..3638911 (-) 831 WP_013353957.1 spermidine synthase -
  D2M30_RS18560 (D2M30_18590) - 3639111..3641183 (+) 2073 WP_125123393.1 transglycosylase domain-containing protein -
  D2M30_RS18565 (D2M30_18595) - 3641208..3641639 (-) 432 WP_125123394.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=314058 D2M30_RS18545 WP_014471166.1 3636917..3637036(+) (phrF) [Bacillus amyloliquefaciens strain YP6]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=314058 D2M30_RS18545 WP_014471166.1 3636917..3637036(+) (phrF) [Bacillus amyloliquefaciens strain YP6]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment