Detailed information NTG0314034

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: D2M30_RS12990
• Genome accession: NZ_CP032146
• Coordinates: 2573179..2575530 (-)
• Length: 783 a.a.
• NCBI ID: WP_125122984.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2568179..2580530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS12955 (D2M30_12980)	-	2568541..2568879 (-)	339	WP_045510470.1	YqxA family protein	-
D2M30_RS12960 (D2M30_12985)	spoIIP	2568896..2570089 (-)	1194	WP_045510467.1	stage II sporulation protein P	-
D2M30_RS12965 (D2M30_12990)	gpr	2570157..2571263 (-)	1107	WP_014470697.1	GPR endopeptidase	-
D2M30_RS12970 (D2M30_12995)	rpsT	2571466..2571732 (+)	267	WP_003152876.1	30S ribosomal protein S20	-
D2M30_RS12975 (D2M30_13000)	holA	2571750..2572791 (-)	1042	Protein_2526	DNA polymerase III subunit delta	-
D2M30_RS12980	-	2572831..2572985 (-)	155	Protein_2527	hypothetical protein	-
D2M30_RS12985 (D2M30_13005)	-	2573026..2573160 (+)	135	WP_003152870.1	YqzM family protein	-
D2M30_RS12990 (D2M30_13010)	comEC	2573179..2575530 (-)	2352	WP_125122984.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
D2M30_RS12995 (D2M30_13015)	-	2575531..2576100 (-)	570	WP_045510461.1	ComE operon protein 2	-
D2M30_RS13000 (D2M30_13020)	comEA	2576166..2576780 (-)	615	WP_125122985.1	helix-hairpin-helix domain-containing protein	Machinery gene
D2M30_RS13005 (D2M30_13025)	comER	2576840..2577661 (+)	822	WP_125122986.1	late competence protein ComER	-
D2M30_RS13010 (D2M30_13030)	-	2577730..2578467 (-)	738	WP_125122987.1	class I SAM-dependent methyltransferase	-
D2M30_RS13015 (D2M30_13035)	rsfS	2578464..2578820 (-)	357	WP_045510454.1	ribosome silencing factor	-
D2M30_RS13020 (D2M30_13040)	yqeK	2578837..2579397 (-)	561	WP_014470705.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
D2M30_RS13025 (D2M30_13045)	-	2579387..2579956 (-)	570	WP_045510448.1	nicotinate-nucleotide adenylyltransferase	-
D2M30_RS13030 (D2M30_13050)	yhbY	2579967..2580257 (-)	291	WP_014470707.1	ribosome assembly RNA-binding protein YhbY	-

Sequence

Protein

• Length: 783 a.a.
• Molecular weight: 87063.84 Da
• Isoelectric Point: 8.6960

>NTDB_id=314034 D2M30_RS12990 WP_125122984.1 2573179..2575530(-) (comEC) [Bacillus amyloliquefaciens strain YP6]
MKYKYLLLPLAAVSATAGIAAANSFCILFFFLLYLLFIIVKTKQHTPVIVCLVSFCLYFFLYTVCDAANVSRYQAGSYTE
EALIINIPKVDGAKMSAVIRTHDKEKWAASYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPRHATVPGGFDYKEYLYSQHI
HWIFSVTSIKQCEKSEQPLFKLLNIRKNLISIIRNHVPESSAGIVEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGMLLLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLLKRSIHSSAALSMSYLLLLLFDP
YLLWQAGFQLSFAVSAALILSSSILKKAGKNRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPF
SVIGFLLLLLSRQAGEFLFYLFDLVMKPVHDFITYAASVDLFAMIASKPDFLSLLMLAVSVFTLFAALEKGGFLKLRKSA
LFFFAVLAYIMFRPYFSPWGEADMLDIGQGDSLFISTPHRKGTVMVDTGGVIAYSEESWKEKHHPYSIGEKVLVPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKKHRVKRLIVPVGFVKEPKDRDILNLAKENNIPVAEAKQGDTITAGDLQFQVLSP
ESPDGRSKNDSSLVLWTVLGGVSWLLTGDLESDGETEMLKTYPNLKADILKAGHHGSKSSTSEAFLKQLQPETALISAGK
DNRYHHPHEEVLDHLKAYSVNVLRTDVSGTIQYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide

• Length: 2352 bp

>NTDB_id=314034 D2M30_RS12990 WP_125122984.1 2573179..2575530(-) (comEC) [Bacillus amyloliquefaciens strain YP6]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACCGCGGGAATTGCCGCCGCTAATTCCTTCTGTAT
CCTATTCTTTTTCCTTCTGTATCTTCTCTTTATTATCGTAAAAACAAAGCAGCACACACCGGTTATCGTCTGCCTCGTAT
CTTTTTGTCTTTATTTCTTTCTGTATACGGTTTGTGACGCTGCGAATGTATCCCGGTATCAGGCCGGCAGCTATACTGAA
GAGGCTCTCATCATAAACATTCCGAAGGTTGACGGAGCGAAAATGTCAGCCGTTATCCGTACCCATGATAAAGAAAAATG
GGCCGCTTCGTACAAAATCCGGTCCCTTGAAGAAAAAAGACTCATTGAACAGCTGGAACCGGGGATGCGCTGTACGTTTA
CAGGCTCACTGGAACAGCCCCGACATGCGACGGTTCCCGGGGGTTTTGATTATAAAGAATATCTTTACTCCCAGCATATT
CACTGGATATTTTCCGTTACTTCCATTAAGCAGTGCGAAAAATCCGAACAGCCGCTGTTTAAGCTTCTGAACATCAGAAA
GAATTTGATTTCGATCATTCGGAATCATGTACCTGAATCTTCCGCGGGAATTGTTGAAGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAGCGCTTATCAAAACTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGCCTTATTACGGCGGGATTATTTTATGCCCTTATCAGAATTGGACTGACAAGAGAAAAAGCGGGGATGTTGCTGCTGCT
TTTTTTGCCGGTGTATACGTTGTTAAGCGGTGCCGCCCCTTCTGTACTGCGCGCATCCCTCATGCTGGGATTTTATATCG
CCGGAACTCTTTTGAAACGCAGCATTCATTCCTCAGCTGCATTGTCCATGTCTTATCTGCTGCTTCTGCTGTTTGATCCT
TACCTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCGCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAACAGACTCGCGGGGCTTGCGATGGCTTCATTCATTGCGGAGCTCAGTTCGCTTCCGTTTCTTCTCTATC
ATTTTCAGCAGATTTCGCTCGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGTTT
TCTGTCATCGGTTTTCTTCTTCTCTTACTTTCCAGGCAGGCGGGGGAATTTTTGTTTTACCTGTTTGACCTTGTGATGAA
GCCCGTGCATGATTTCATTACATATGCGGCATCCGTTGATTTATTTGCAATGATTGCGTCAAAGCCTGACTTTCTGTCGC
TTCTTATGCTTGCGGTTTCCGTTTTTACGCTTTTTGCAGCTTTGGAAAAGGGAGGTTTTTTAAAGCTCAGGAAATCGGCT
CTTTTTTTCTTTGCGGTTTTGGCTTATATAATGTTCCGTCCTTATTTCAGTCCTTGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGCGACTCACTGTTTATAAGTACCCCGCACCGTAAAGGGACTGTAATGGTTGATACAGGAGGAGTGATTGCTT
ATTCCGAAGAATCGTGGAAAGAAAAACACCATCCGTATTCTATCGGCGAGAAAGTTTTAGTTCCGTTTTTGAACGGAAAG
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCATATCGGGGAAGCCGGAGTATTAATCAAAAA
ACATAGAGTGAAACGGTTAATTGTCCCCGTGGGATTCGTGAAGGAACCGAAGGATCGGGATATATTGAATTTGGCGAAAG
AAAACAACATTCCCGTTGCTGAAGCAAAACAGGGCGATACCATAACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCG
GAGTCGCCTGACGGAAGGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCGGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACAGAGATGCTGAAAACGTATCCGAATCTGAAAGCTGATATATTGAAGGCCGGTC
ATCACGGCAGCAAAAGCTCTACGAGTGAAGCCTTTTTGAAACAGCTTCAGCCGGAGACAGCGCTGATTTCAGCAGGAAAA
GATAATCGTTATCATCATCCGCATGAAGAAGTGCTGGATCATTTGAAAGCTTACTCTGTCAATGTGCTTCGCACCGATGT
AAGCGGAACGATTCAATACAGATTTAAAAAAGGCGCCGGAACGTTTTCTGTCTTCCCTCCATATGATATAGAAGAAACCA
GGGCGCAGGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (508-719)

• Competence protein (Competence) (208-469)

• Domain of unknown function (DUF4131) (DUF4131) (26-171)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Bacillus subtilis subsp. subtilis str. 168	55.959	98.595	0.552