Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D2M30_RS12335 Genome accession   NZ_CP032146
Coordinates   2461800..2463530 (-) Length   576 a.a.
NCBI ID   WP_125122947.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2456800..2468530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS12310 (D2M30_12335) - 2457168..2457380 (+) 213 WP_014470647.1 spore germination protein -
  D2M30_RS12315 (D2M30_12340) - 2457505..2457717 (+) 213 WP_013352823.1 spore germination protein -
  D2M30_RS12320 (D2M30_12345) alr 2457903..2459084 (+) 1182 WP_125122946.1 alanine racemase -
  D2M30_RS12325 (D2M30_12350) spo0A 2459275..2460075 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  D2M30_RS12330 (D2M30_12355) spoIVB 2460356..2461636 (-) 1281 WP_088613100.1 SpoIVB peptidase -
  D2M30_RS12335 (D2M30_12360) recN 2461800..2463530 (-) 1731 WP_125122947.1 DNA repair protein RecN Machinery gene
  D2M30_RS12340 (D2M30_12365) ahrC 2463562..2464011 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  D2M30_RS12345 (D2M30_12370) - 2464108..2464953 (-) 846 WP_065522788.1 TlyA family RNA methyltransferase -
  D2M30_RS12350 (D2M30_12375) dxs 2464950..2466851 (-) 1902 WP_125122948.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D2M30_RS12355 (D2M30_12380) - 2466995..2467885 (-) 891 WP_125122949.1 polyprenyl synthetase family protein -
  D2M30_RS12360 (D2M30_12385) - 2467875..2468129 (-) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64004.87 Da        Isoelectric Point: 4.7614

>NTDB_id=314024 D2M30_RS12335 WP_125122947.1 2461800..2463530(-) (recN) [Bacillus amyloliquefaciens strain YP6]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSAGEAPIVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKSTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=314024 D2M30_RS12335 WP_125122947.1 2461800..2463530(-) (recN) [Bacillus amyloliquefaciens strain YP6]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATCTCGTTTGAACGGGGGCTCACCGTCTT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTCCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCGAAGCTTGAACTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCGACCTTTCAGATGCGCAATTTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATCGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCTGTCGGCAAAGATGTGGCTGTAGAAGCAGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTCCTCGTG
AAGACCGATCCGTCAGCCGGTGAAGCGCCGATTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGTATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGGGAGCCGCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAAAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACTCATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGGACGACGACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAATCGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891

Multiple sequence alignment