Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D2M30_RS12325 Genome accession   NZ_CP032146
Coordinates   2459275..2460075 (-) Length   266 a.a.
NCBI ID   WP_045510705.1    Uniprot ID   A0AAP7TAW5
Organism   Bacillus amyloliquefaciens strain YP6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454275..2465075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS12300 (D2M30_12325) - 2454767..2455399 (+) 633 WP_125122945.1 helix-turn-helix domain-containing protein -
  D2M30_RS20655 (D2M30_2591) - 2455692..2455829 (+) 138 WP_014470646.1 hypothetical protein -
  D2M30_RS12305 (D2M30_12330) - 2455923..2457041 (+) 1119 Protein_2393 NADH-dependent flavin oxidoreductase -
  D2M30_RS12310 (D2M30_12335) - 2457168..2457380 (+) 213 WP_014470647.1 spore germination protein -
  D2M30_RS12315 (D2M30_12340) - 2457505..2457717 (+) 213 WP_013352823.1 spore germination protein -
  D2M30_RS12320 (D2M30_12345) alr 2457903..2459084 (+) 1182 WP_125122946.1 alanine racemase -
  D2M30_RS12325 (D2M30_12350) spo0A 2459275..2460075 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  D2M30_RS12330 (D2M30_12355) spoIVB 2460356..2461636 (-) 1281 WP_088613100.1 SpoIVB peptidase -
  D2M30_RS12335 (D2M30_12360) recN 2461800..2463530 (-) 1731 WP_125122947.1 DNA repair protein RecN Machinery gene
  D2M30_RS12340 (D2M30_12365) ahrC 2463562..2464011 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  D2M30_RS12345 (D2M30_12370) - 2464108..2464953 (-) 846 WP_065522788.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=314023 D2M30_RS12325 WP_045510705.1 2459275..2460075(-) (spo0A) [Bacillus amyloliquefaciens strain YP6]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=314023 D2M30_RS12325 WP_045510705.1 2459275..2460075(-) (spo0A) [Bacillus amyloliquefaciens strain YP6]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCTTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGCGTCACACACCGAGCGC
CGTCCGCGCAAAGCAGCATCATCCGCAGTCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment