Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D2M30_RS05715 Genome accession   NZ_CP032146
Coordinates   1113458..1115287 (+) Length   609 a.a.
NCBI ID   WP_125122388.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108458..1120287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS05690 (D2M30_05705) - 1109121..1109699 (+) 579 WP_013351830.1 GNAT family N-acetyltransferase -
  D2M30_RS05695 (D2M30_05710) spx 1109877..1110272 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  D2M30_RS05700 (D2M30_05715) - 1110330..1110986 (-) 657 WP_125122386.1 TerC family protein -
  D2M30_RS05705 (D2M30_05720) mecA 1111262..1111918 (+) 657 WP_014470612.1 adaptor protein MecA Regulator
  D2M30_RS05710 (D2M30_05725) - 1112069..1113229 (+) 1161 WP_125122387.1 competence protein CoiA family protein -
  D2M30_RS05715 (D2M30_05730) pepF 1113458..1115287 (+) 1830 WP_125122388.1 oligoendopeptidase F Regulator
  D2M30_RS20535 (D2M30_1218) - 1115323..1115490 (-) 168 WP_016938224.1 hypothetical protein -
  D2M30_RS05720 (D2M30_05735) spxH 1115775..1116677 (-) 903 WP_013351835.1 protease adaptor protein SpxH -
  D2M30_RS05725 (D2M30_05740) - 1116674..1117072 (-) 399 WP_013351836.1 thiol management oxidoreductase -
  D2M30_RS05730 (D2M30_05745) - 1117297..1117983 (-) 687 WP_125122389.1 lytic transglycosylase domain-containing protein -
  D2M30_RS05735 (D2M30_05750) - 1117988..1118560 (-) 573 WP_125122390.1 CYTH domain-containing protein -
  D2M30_RS05740 (D2M30_05755) - 1118685..1119050 (+) 366 WP_013351839.1 hypothetical protein -
  D2M30_RS05745 (D2M30_05760) yjbM 1119078..1119713 (+) 636 WP_013351840.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69758.42 Da        Isoelectric Point: 5.4370

>NTDB_id=314011 D2M30_RS05715 WP_125122388.1 1113458..1115287(+) (pepF) [Bacillus amyloliquefaciens strain YP6]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKVYSHAIEEITKQRPHVLSEK
EEALLAEASEALSSPSNTFSILNNADITFPSIKDENGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNNIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHNYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGDEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDTVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNKLYYDLNKKYFGDNMVIDEEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTNFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=314011 D2M30_RS05715 WP_125122388.1 1113458..1115287(+) (pepF) [Bacillus amyloliquefaciens strain YP6]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGACAATTTATATGCGGCTCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGAAAACTTTAC
GCATACGCGCATATGCGCTCAGATCAGGATACGGGAAATTCTTTCTACCAAGGACTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCCGCCAGTGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTTAAGGTTTACTCCCATGCCATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGCGAAAAA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTATTTTAAACAACGCCGATAT
TACGTTTCCGTCGATAAAAGATGAAAACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGATCGTGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGATAATTTCTACGCCCGGGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAACATCCCTGAAGAAGTTTATGATAACCTTATCAAAACGATCAATAAACATCTTCCGTTATTACACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGACGAAGTCCATAATTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACTTATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGATGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTAATGAACTGGCACGACACTGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCA
GTGCACAGCTACTATACGAGAAAATATCAGCCGTATCCGTATGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTATCTTCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGGCAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGTTAACGCCTGAACTGCTGAACAAGCTTTATTATGATCTGAATAAAAAGTATTTCGGAGACAACATGGT
AATTGATGAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCTCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCAACTTCTTA
AAAGCCGGAAGCTCAGAATATCCGATCGACATCCTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAAGC
TGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTCCTTTCGAAAGTGAATCCTTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

97.537

0.486

Multiple sequence alignment