Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   D2M30_RS05595 Genome accession   NZ_CP032146
Coordinates   1089960..1090151 (+) Length   63 a.a.
NCBI ID   WP_013351814.1    Uniprot ID   A0AAP7TCS9
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084960..1095151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS05560 (D2M30_05575) argF 1085804..1086760 (+) 957 WP_125122378.1 ornithine carbamoyltransferase -
  D2M30_RS05565 (D2M30_05580) - 1086850..1087029 (+) 180 WP_013351809.1 YjzC family protein -
  D2M30_RS05570 (D2M30_05585) - 1087070..1087258 (-) 189 WP_013351810.1 YjzD family protein -
  D2M30_RS05580 (D2M30_05595) - 1087519..1088253 (+) 735 WP_045507014.1 hypothetical protein -
  D2M30_RS05585 (D2M30_05600) - 1088334..1088900 (+) 567 WP_125122379.1 hypothetical protein -
  D2M30_RS05590 (D2M30_05605) med 1088994..1089947 (+) 954 WP_013351813.1 BMP family ABC transporter substrate-binding protein Regulator
  D2M30_RS05595 (D2M30_05610) comZ 1089960..1090151 (+) 192 WP_013351814.1 ComZ family protein Regulator
  D2M30_RS05600 (D2M30_05615) - 1090182..1090400 (-) 219 WP_013351815.1 hypothetical protein -
  D2M30_RS05605 (D2M30_05620) - 1090566..1091504 (+) 939 WP_013351816.1 beta-ketoacyl-ACP synthase III -
  D2M30_RS05610 (D2M30_05625) fabF 1091528..1092766 (+) 1239 WP_125122380.1 beta-ketoacyl-ACP synthase II -
  D2M30_RS05615 (D2M30_05630) - 1092850..1093635 (+) 786 WP_125122381.1 DUF2268 domain-containing protein -
  D2M30_RS05620 (D2M30_05635) - 1093809..1094795 (+) 987 WP_014470616.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7202.35 Da        Isoelectric Point: 4.3344

>NTDB_id=314007 D2M30_RS05595 WP_013351814.1 1089960..1090151(+) (comZ) [Bacillus amyloliquefaciens strain YP6]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMNLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=314007 D2M30_RS05595 WP_013351814.1 1089960..1090151(+) (comZ) [Bacillus amyloliquefaciens strain YP6]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCGAAGGCGGAGCTTGAGAAATC
AGGCATTGATCTGTCTATGGAAATGATTCAGCCGTTCATGAACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

87.931

92.063

0.81

Multiple sequence alignment