Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | D2M30_RS00580 | Genome accession | NZ_CP032146 |
| Coordinates | 104080..106515 (+) | Length | 811 a.a. |
| NCBI ID | WP_013350791.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain YP6 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99080..111515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2M30_RS00565 (D2M30_00570) | ctsR | 101957..102421 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| D2M30_RS00570 (D2M30_00575) | - | 102435..102992 (+) | 558 | WP_013350789.1 | UvrB/UvrC motif-containing protein | - |
| D2M30_RS00575 (D2M30_00580) | - | 102992..104083 (+) | 1092 | WP_013350790.1 | protein arginine kinase | - |
| D2M30_RS00580 (D2M30_00585) | clpC | 104080..106515 (+) | 2436 | WP_013350791.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| D2M30_RS00585 (D2M30_00590) | radA | 106609..107988 (+) | 1380 | WP_045514053.1 | DNA repair protein RadA | Machinery gene |
| D2M30_RS00590 (D2M30_00595) | disA | 107992..109074 (+) | 1083 | WP_014469611.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| D2M30_RS00595 (D2M30_00600) | - | 109188..110288 (+) | 1101 | WP_013350794.1 | PIN/TRAM domain-containing protein | - |
| D2M30_RS00600 (D2M30_00605) | ispD | 110302..111000 (+) | 699 | WP_071348600.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| D2M30_RS00605 (D2M30_00610) | ispF | 110993..111469 (+) | 477 | WP_013350796.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90178.61 Da Isoelectric Point: 5.7566
>NTDB_id=313989 D2M30_RS00580 WP_013350791.1 104080..106515(+) (clpC) [Bacillus amyloliquefaciens strain YP6]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=313989 D2M30_RS00580 WP_013350791.1 104080..106515(+) (clpC) [Bacillus amyloliquefaciens strain YP6]
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCATTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCACTTG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTTCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGCGAGGGAGTCGCCGCGAGGGTTTTAAATAATCTGGGTGTCAGTCTCAATA
AGGCAAGACAGCAGGTTCTGCAGCTTCTTGGAAGCAATGAAACAGGGACATCTGGAGCCGGGACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGCCTTGCTCGTGATTTAACTGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGACTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGAACGGTTGTAGCCGGCACGAAATACCGTGGAGAATTTGAAGACCGCCTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATTGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGCCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGGCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCAGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAATCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAGAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCATTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCACTTG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTTCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGCGAGGGAGTCGCCGCGAGGGTTTTAAATAATCTGGGTGTCAGTCTCAATA
AGGCAAGACAGCAGGTTCTGCAGCTTCTTGGAAGCAATGAAACAGGGACATCTGGAGCCGGGACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGCCTTGCTCGTGATTTAACTGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGACTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGAACGGTTGTAGCCGGCACGAAATACCGTGGAGAATTTGAAGACCGCCTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATTGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGCCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGGCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCAGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAATCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAGAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.301 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.689 |
99.014 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus mutans UA159 |
44.632 |
100 |
0.456 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpE | Streptococcus mutans UA159 |
53.775 |
80.025 |
0.43 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae Rx1 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae D39 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae R6 |
52.417 |
81.628 |
0.428 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.291 |
84.834 |
0.427 |