Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D3C60_RS15095 Genome accession   NZ_CP032144
Coordinates   3053344..3053988 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BIM B-439D     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048344..3058988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS15060 (D3C60_15060) - 3049529..3049960 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  D3C60_RS15065 (D3C60_15065) - 3049960..3050301 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  D3C60_RS15070 (D3C60_15070) - 3050294..3051775 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  D3C60_RS15075 (D3C60_15075) - 3051781..3052257 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  D3C60_RS15080 (D3C60_15080) - 3052257..3052541 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  D3C60_RS15085 (D3C60_15085) mnhG 3052525..3052899 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  D3C60_RS15090 (D3C60_15090) - 3052939..3053322 (-) 384 WP_032869799.1 hotdog fold thioesterase -
  D3C60_RS15095 (D3C60_15095) comA 3053344..3053988 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  D3C60_RS15100 (D3C60_15100) comP 3054069..3056378 (-) 2310 WP_033574914.1 histidine kinase Regulator
  D3C60_RS15105 (D3C60_15105) comX 3056398..3056574 (-) 177 WP_007408675.1 competence pheromone ComX -
  D3C60_RS15110 (D3C60_15110) comQ 3056574..3057512 (-) 939 WP_020954300.1 polyprenyl synthetase family protein Regulator
  D3C60_RS15115 (D3C60_15115) degQ 3057643..3057783 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  D3C60_RS15125 (D3C60_15125) - 3058246..3058587 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=313945 D3C60_RS15095 WP_003152052.1 3053344..3053988(-) (comA) [Bacillus velezensis strain BIM B-439D]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=313945 D3C60_RS15095 WP_003152052.1 3053344..3053988(-) (comA) [Bacillus velezensis strain BIM B-439D]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment