Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D3C60_RS02000 Genome accession   NZ_CP032144
Coordinates   396243..397196 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus velezensis strain BIM B-439D     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391243..402196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS01975 (D3C60_01975) - 391290..392723 (+) 1434 WP_162782989.1 HAMP domain-containing sensor histidine kinase -
  D3C60_RS01980 (D3C60_01980) rapC 392876..394024 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  D3C60_RS01985 (D3C60_01985) phrC 394008..394127 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D3C60_RS01990 (D3C60_01990) - 394275..394370 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  D3C60_RS01995 (D3C60_01995) - 394465..395829 (-) 1365 WP_020955323.1 aspartate kinase -
  D3C60_RS02000 (D3C60_02000) ceuB 396243..397196 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  D3C60_RS02005 (D3C60_02005) - 397186..398133 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  D3C60_RS02010 (D3C60_02010) - 398127..398885 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  D3C60_RS02015 (D3C60_02015) - 398907..399851 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  D3C60_RS02020 (D3C60_02020) - 399893..401317 (-) 1425 WP_119001706.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=313897 D3C60_RS02000 WP_015239156.1 396243..397196(+) (ceuB) [Bacillus velezensis strain BIM B-439D]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=313897 D3C60_RS02000 WP_015239156.1 396243..397196(+) (ceuB) [Bacillus velezensis strain BIM B-439D]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment