Detailed information NTG0313895

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D3C60_RS01980
• Genome accession: NZ_CP032144
• Coordinates: 392876..394024 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BIM B-439D
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 387876..399024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3C60_RS01960 (D3C60_01960)	-	388297..388980 (-)	684	WP_007410265.1	ABC transporter ATP-binding protein	-
D3C60_RS01965 (D3C60_01965)	-	388995..390407 (-)	1413	WP_047935211.1	ABC transporter permease	-
D3C60_RS01970 (D3C60_01970)	-	390620..391303 (+)	684	WP_119001705.1	response regulator transcription factor	-
D3C60_RS01975 (D3C60_01975)	-	391290..392723 (+)	1434	WP_162782989.1	HAMP domain-containing sensor histidine kinase	-
D3C60_RS01980 (D3C60_01980)	rapC	392876..394024 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
D3C60_RS01985 (D3C60_01985)	phrC	394008..394127 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
D3C60_RS01990 (D3C60_01990)	-	394275..394370 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
D3C60_RS01995 (D3C60_01995)	-	394465..395829 (-)	1365	WP_020955323.1	aspartate kinase	-
D3C60_RS02000 (D3C60_02000)	ceuB	396243..397196 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
D3C60_RS02005 (D3C60_02005)	-	397186..398133 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
D3C60_RS02010 (D3C60_02010)	-	398127..398885 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=313895 D3C60_RS01980 WP_007410270.1 392876..394024(+) (rapC) [Bacillus velezensis strain BIM B-439D]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=313895 D3C60_RS01980 WP_007410270.1 392876..394024(+) (rapC) [Bacillus velezensis strain BIM B-439D]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568