Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CDG61_RS16245 Genome accession   NZ_CP032143
Coordinates   3327588..3329159 (+) Length   523 a.a.
NCBI ID   WP_087513574.1    Uniprot ID   A0A3B7LYT6
Organism   Acinetobacter sp. WCHAc010052     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3322588..3334159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS16225 (CDG61_16225) - 3323028..3324332 (+) 1305 WP_087551556.1 homoserine dehydrogenase -
  CDG61_RS16230 (CDG61_16230) thrC 3324394..3325533 (+) 1140 WP_087513577.1 threonine synthase -
  CDG61_RS16235 (CDG61_16235) pbpG 3325628..3326692 (-) 1065 WP_087551513.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG61_RS16240 (CDG61_16240) - 3326928..3327563 (+) 636 WP_087551514.1 response regulator -
  CDG61_RS16245 (CDG61_16245) pilS 3327588..3329159 (+) 1572 WP_087513574.1 sensor histidine kinase Regulator
  CDG61_RS16250 (CDG61_16250) pilR 3329235..3330605 (+) 1371 WP_416240720.1 sigma-54-dependent transcriptional regulator Regulator
  CDG61_RS16255 (CDG61_16255) - 3330615..3331784 (-) 1170 WP_087551516.1 S41 family peptidase -
  CDG61_RS16260 (CDG61_16260) gpmI 3331806..3333353 (-) 1548 WP_087551517.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 59266.98 Da        Isoelectric Point: 6.4905

>NTDB_id=313881 CDG61_RS16245 WP_087513574.1 3327588..3329159(+) (pilS) [Acinetobacter sp. WCHAc010052]
MIQNSLTSEMNQYHLGMWYAAYRMIISCCMLLIFIITSVQLASDYQHPQLYLYTLIGYFLMGCLQLIGMKNIPVHITQQL
TWIFVVDVAVLSLLTFAANGPNLHLSLLFVITIFAASLLLNSRKALVITLIAVISVIYQHFISSLFALSSLNNIGNSVLL
AIMFFVVYGCGLVAVRRFQILETLNFHQSIELDRLQNINRYILEQVEMGYLVLDENCHVVLSNPAACTLLGISPLYAFNI
YPLYKLQPDLFDILKFDQLQNGEKFQFESQFSSYLVHIEVQKLIVPHQTLTLLVLQDARRINQQVQQLKLAALGQLSASI
AHEIRNPLAAIAQANVLFAGSDAEQQQSLSQMISRQTQRIDKIISDTLSMVRNRETHPTEIQLPTFIPQFIKEDLSDISQ
KIRCHLQSSDLTVCFDESQLRQVLINLIRNAIRHNAPDQNCIELVIQAEGKNIQIDVRDYGSGVALQDIAYLFQPFFSTE
ITGTGLGLYLSHSFCEANQAKLSYVEQKQGACFRIECPRVYLN

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=313881 CDG61_RS16245 WP_087513574.1 3327588..3329159(+) (pilS) [Acinetobacter sp. WCHAc010052]
ATGATCCAGAACTCACTCACTTCAGAAATGAATCAATATCATCTGGGCATGTGGTACGCTGCATACCGCATGATTATTTC
ATGCTGTATGTTACTGATTTTTATTATTACCTCTGTACAGCTGGCATCTGACTATCAACACCCACAGCTTTACTTATATA
CATTGATCGGTTATTTCCTGATGGGTTGCCTGCAACTGATCGGGATGAAAAATATTCCTGTTCATATTACCCAGCAACTG
ACCTGGATTTTTGTGGTCGATGTTGCAGTCCTCAGTCTGCTGACCTTTGCTGCCAATGGTCCCAATCTGCATCTGAGCCT
GCTCTTTGTCATCACTATTTTTGCAGCTTCTTTATTACTGAATTCAAGAAAAGCGCTGGTGATTACACTGATTGCCGTGA
TCAGTGTCATTTATCAGCATTTTATCAGCAGCCTGTTTGCTCTCAGCTCATTAAACAATATTGGAAACAGCGTACTGCTC
GCCATTATGTTTTTTGTTGTGTACGGCTGTGGACTGGTAGCCGTCCGTCGCTTCCAGATTCTGGAAACACTGAATTTTCA
CCAGTCCATTGAACTGGACCGCTTACAGAACATTAACCGCTACATCCTGGAACAGGTGGAGATGGGTTATCTGGTACTGG
ATGAAAACTGCCATGTGGTGCTGAGTAATCCTGCTGCCTGCACCCTGCTGGGTATCTCTCCGCTGTATGCCTTTAATATT
TATCCACTGTATAAATTACAGCCCGACCTGTTTGATATTCTGAAGTTTGATCAGTTACAGAATGGTGAAAAATTCCAGTT
TGAATCACAGTTCAGCAGTTATCTGGTGCATATTGAAGTACAGAAACTGATTGTGCCTCACCAGACGCTGACACTGCTGG
TGCTTCAGGATGCGCGGCGTATCAATCAACAGGTTCAGCAGCTGAAACTGGCTGCCTTGGGACAGCTGTCTGCCAGTATT
GCCCATGAAATCCGAAACCCTCTTGCTGCTATTGCACAGGCCAATGTCCTGTTTGCCGGCAGTGATGCAGAGCAGCAGCA
AAGTCTAAGCCAGATGATCAGTCGGCAGACTCAACGGATTGATAAAATTATCAGTGATACACTCAGTATGGTGCGCAACA
GGGAAACCCATCCGACTGAAATTCAGCTTCCGACCTTTATTCCCCAATTTATTAAAGAAGATCTTTCTGACATCTCCCAG
AAAATCCGCTGTCATCTACAAAGCAGCGACCTGACTGTCTGCTTTGATGAATCACAGCTCAGACAGGTACTGATCAATCT
GATCCGCAATGCAATCCGGCATAATGCTCCCGATCAGAACTGTATCGAACTGGTCATACAGGCAGAGGGCAAAAACATTC
AGATTGACGTCCGTGACTATGGTTCTGGTGTTGCCCTGCAGGATATTGCCTATCTGTTTCAACCATTTTTCAGTACCGAA
ATTACCGGAACTGGTTTAGGATTGTATCTATCACACAGCTTCTGTGAAGCCAATCAGGCTAAGCTGAGCTATGTAGAACA
AAAACAAGGGGCCTGTTTCAGGATTGAATGCCCACGCGTTTATTTAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LYT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.921

97.323

0.583

Multiple sequence alignment