Detailed information NTG0313855

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CDG61_RS02055
• Genome accession: NZ_CP032143
• Coordinates: 358196..358639 (+)
• Length: 147 a.a.
• NCBI ID: WP_171405566.1
• Uniprot ID: -
• Organism: Acinetobacter sp. WCHAc010052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 353196..363639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG61_RS02045 (CDG61_02045)	-	354312..357635 (+)	3324	WP_322887956.1	pilus assembly protein	-
CDG61_RS02050 (CDG61_02050)	-	357645..358202 (+)	558	WP_087549876.1	type IV pilin protein	-
CDG61_RS02055 (CDG61_02055)	comF	358196..358639 (+)	444	WP_171405566.1	type IV pilin protein	Machinery gene
CDG61_RS02060 (CDG61_02060)	rpsP	358782..359039 (+)	258	WP_087512172.1	30S ribosomal protein S16	-
CDG61_RS02065 (CDG61_02065)	rimM	359068..359616 (+)	549	WP_087549877.1	ribosome maturation factor RimM	-
CDG61_RS02070 (CDG61_02070)	trmD	359670..360416 (+)	747	WP_087512174.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CDG61_RS02075 (CDG61_02075)	rplS	360554..360928 (+)	375	WP_087512175.1	50S ribosomal protein L19	-
CDG61_RS02080 (CDG61_02080)	-	361310..361807 (+)	498	WP_228199602.1	pilus assembly FimT family protein	-
CDG61_RS02085 (CDG61_02085)	pilV	361804..362313 (+)	510	WP_171405567.1	type IV pilus modification protein PilV	-
CDG61_RS02090 (CDG61_02090)	-	362315..363409 (+)	1095	WP_087549879.1	PilW family protein	-

Sequence

Protein

• Length: 147 a.a.
• Molecular weight: 15964.15 Da
• Isoelectric Point: 9.3610

>NTDB_id=313855 CDG61_RS02055 WP_171405566.1 358196..358639(+) (comF) [Acinetobacter sp. WCHAc010052]
MVMRLYRGFTLIELMIVVAIIAILAAIAYPSYQEYVRKTKRAEMQSEMMSIATNLQSYRAINHNYTGAKLSNSGLSQSFP
ATGTANYTLNLSVAAQTWTLTAQPQNGQAGNGHLVLNNLGHKCWTKGSDDNSGSACAPTALTSWDGR

Nucleotide

• Length: 444 bp

>NTDB_id=313855 CDG61_RS02055 WP_171405566.1 358196..358639(+) (comF) [Acinetobacter sp. WCHAc010052]
ATGGTAATGCGGCTGTACAGGGGTTTTACTCTGATTGAGTTAATGATCGTGGTTGCGATTATTGCCATTCTTGCGGCAAT
TGCATATCCATCTTATCAGGAATATGTGCGGAAAACTAAACGTGCAGAAATGCAAAGCGAGATGATGAGCATAGCAACGA
ACCTGCAAAGTTACAGGGCGATCAATCATAATTACACCGGAGCGAAACTGAGTAACTCGGGTCTGTCACAGAGCTTTCCA
GCAACAGGTACAGCAAATTATACATTGAACCTGTCTGTAGCGGCACAGACCTGGACGCTTACAGCACAGCCACAAAATGG
TCAGGCAGGCAATGGACATCTTGTTCTGAATAACCTGGGACATAAGTGCTGGACCAAAGGCAGTGATGACAACAGTGGTT
CAGCATGCGCGCCAACAGCACTGACCAGCTGGGATGGTCGCTGA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (30-110)

• Prokaryotic N-terminal methylation motif (N_methyl) (3-29)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	51.007	100	0.517
pilE	Acinetobacter baumannii D1279779	47.917	97.959	0.469
comE	Acinetobacter baylyi ADP1	35.329	100	0.401