Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CDG60_RS16095 Genome accession   NZ_CP032134
Coordinates   3172687..3173370 (+) Length   227 a.a.
NCBI ID   WP_087512839.1    Uniprot ID   A0A3B7M001
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3167687..3178370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS16080 (CDG60_16080) - 3168949..3169698 (-) 750 WP_087512836.1 NAD(P)H-binding protein -
  CDG60_RS16085 (CDG60_16085) recG 3169758..3171803 (+) 2046 WP_087512837.1 ATP-dependent DNA helicase RecG -
  CDG60_RS16090 (CDG60_16090) - 3171804..3172577 (-) 774 WP_087512838.1 DUF4184 family protein -
  CDG60_RS16095 (CDG60_16095) comF 3172687..3173370 (+) 684 WP_087512839.1 ComF family protein Machinery gene
  CDG60_RS16100 (CDG60_16100) - 3173754..3174152 (-) 399 WP_087512840.1 NUDIX domain-containing protein -
  CDG60_RS16105 (CDG60_16105) - 3174231..3174827 (-) 597 WP_087512892.1 TIGR00730 family Rossman fold protein -
  CDG60_RS16110 (CDG60_16110) - 3174984..3175997 (+) 1014 WP_087512841.1 CorA family divalent cation transporter -
  CDG60_RS16115 (CDG60_16115) - 3176106..3176393 (-) 288 WP_087512842.1 lipid asymmetry maintenance protein MlaB -
  CDG60_RS16120 (CDG60_16120) - 3176406..3177032 (-) 627 WP_087512843.1 phospholipid-binding protein MlaC -
  CDG60_RS16125 (CDG60_16125) - 3177051..3177734 (-) 684 WP_087512844.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26357.60 Da        Isoelectric Point: 8.7703

>NTDB_id=313838 CDG60_RS16095 WP_087512839.1 3172687..3173370(+) (comF) [Acinetobacter chinensis strain WCHAc010005]
MLSFINQLLNKGVQSISPCLLCGIDHQQQHSLCNDCWEQLPWYKQHIQRHEHSILCAHHYDFPMNRIIQTYKYEQQLQYQ
NLLARSLLNLRTPKVHAIVPMPISTERLKERGYNQMLIIAKIMARELKIPVWQPVIRAAQYSQKGLSRIERLENIEEQFQ
IIPAEKRKYKKVLIIDDVVTTGSSIHALSQALEKLGCQQIYTACIAAGGIKRQSQPGEVEINFKEND

Nucleotide


Download         Length: 684 bp        

>NTDB_id=313838 CDG60_RS16095 WP_087512839.1 3172687..3173370(+) (comF) [Acinetobacter chinensis strain WCHAc010005]
ATGCTCTCATTCATCAACCAACTGCTTAATAAAGGTGTACAAAGCATCTCCCCTTGCCTGCTCTGTGGCATAGACCATCA
GCAGCAGCATTCTCTTTGCAACGATTGCTGGGAACAACTGCCGTGGTACAAGCAACACATCCAGCGTCATGAACACAGCA
TCCTTTGCGCACACCATTATGACTTTCCCATGAACCGGATTATTCAGACTTATAAATATGAACAGCAGCTCCAGTATCAG
AATCTTCTCGCACGCAGCTTACTGAATTTAAGAACTCCCAAAGTTCACGCCATTGTCCCCATGCCCATTTCCACAGAACG
ACTCAAAGAACGTGGCTATAACCAGATGTTGATCATTGCAAAAATTATGGCGAGAGAACTGAAAATCCCTGTATGGCAAC
CTGTGATCCGTGCAGCGCAATATTCACAAAAAGGCTTAAGTCGCATCGAACGACTGGAAAATATCGAAGAACAGTTTCAG
ATCATTCCAGCAGAAAAACGGAAATATAAAAAAGTACTGATCATTGATGATGTCGTAACAACAGGAAGTTCAATTCATGC
ACTCAGCCAAGCCTTAGAAAAACTTGGCTGTCAGCAAATTTATACCGCATGTATTGCAGCAGGAGGAATTAAAAGACAAT
CTCAGCCTGGAGAAGTAGAGATCAATTTCAAAGAAAATGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7M001

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.476

92.511

0.559
  comF Acinetobacter baumannii D1279779

60

92.511

0.555

Multiple sequence alignment