Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | CDG60_RS10335 | Genome accession | NZ_CP032134 |
| Coordinates | 1964741..1965124 (-) | Length | 127 a.a. |
| NCBI ID | WP_087512292.1 | Uniprot ID | A0A3B7LVX3 |
| Organism | Acinetobacter chinensis strain WCHAc010005 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1959741..1970124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG60_RS10305 (CDG60_10305) | tadA | 1960022..1960543 (-) | 522 | WP_087512286.1 | tRNA adenosine(34) deaminase TadA | - |
| CDG60_RS10310 (CDG60_10310) | - | 1960551..1961675 (-) | 1125 | WP_087512287.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CDG60_RS10315 (CDG60_10315) | ung | 1961672..1962385 (-) | 714 | WP_087512288.1 | uracil-DNA glycosylase | - |
| CDG60_RS10320 (CDG60_10320) | - | 1962423..1963022 (-) | 600 | WP_087512289.1 | 6-carboxytetrahydropterin synthase | - |
| CDG60_RS10325 (CDG60_10325) | gspK | 1963125..1964117 (-) | 993 | WP_087512290.1 | type II secretion system minor pseudopilin GspK | - |
| CDG60_RS10330 (CDG60_10330) | xcpW | 1964118..1964744 (-) | 627 | WP_087512291.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| CDG60_RS10335 (CDG60_10335) | xcpV | 1964741..1965124 (-) | 384 | WP_087512292.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| CDG60_RS10340 (CDG60_10340) | - | 1965111..1965671 (-) | 561 | WP_087512293.1 | Tfp pilus assembly protein FimT/FimU | - |
| CDG60_RS10345 (CDG60_10345) | - | 1965680..1966294 (-) | 615 | WP_087512294.1 | TetR/AcrR family transcriptional regulator | - |
| CDG60_RS10350 (CDG60_10350) | - | 1966344..1967117 (-) | 774 | WP_087512295.1 | TatD family hydrolase | - |
| CDG60_RS10355 (CDG60_10355) | - | 1967143..1967484 (-) | 342 | WP_087512296.1 | PilZ domain-containing protein | - |
| CDG60_RS10360 (CDG60_10360) | - | 1967496..1968479 (-) | 984 | WP_087512297.1 | DNA polymerase III subunit delta' | - |
| CDG60_RS10365 (CDG60_10365) | kdsB | 1968495..1969256 (-) | 762 | WP_087512298.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 127 a.a. Molecular weight: 14063.13 Da Isoelectric Point: 8.5051
>NTDB_id=313824 CDG60_RS10335 WP_087512292.1 1964741..1965124(-) (xcpV) [Acinetobacter chinensis strain WCHAc010005]
MKKNKGFTLLEVMVALAIFATAAMALTKVAMQYTQATSNAVLRTKAQFVAMNAAAQMEINREWLEGTQSEQVEQQGENWQ
IDKSTQPTVSPDVQRVTVQVSLFNKETGKVEAGITNIVFFNYRIAAS
MKKNKGFTLLEVMVALAIFATAAMALTKVAMQYTQATSNAVLRTKAQFVAMNAAAQMEINREWLEGTQSEQVEQQGENWQ
IDKSTQPTVSPDVQRVTVQVSLFNKETGKVEAGITNIVFFNYRIAAS
Nucleotide
Download Length: 384 bp
>NTDB_id=313824 CDG60_RS10335 WP_087512292.1 1964741..1965124(-) (xcpV) [Acinetobacter chinensis strain WCHAc010005]
ATGAAGAAAAATAAAGGATTTACCTTACTTGAAGTGATGGTTGCTCTCGCAATTTTTGCCACAGCAGCAATGGCGCTGAC
CAAAGTGGCGATGCAGTATACCCAAGCAACCTCCAATGCCGTTCTGCGCACCAAAGCACAGTTTGTTGCAATGAATGCAG
CAGCGCAGATGGAAATCAACAGAGAATGGCTGGAGGGAACTCAGTCAGAGCAGGTGGAACAACAGGGCGAAAACTGGCAG
ATTGATAAAAGTACTCAGCCCACAGTCAGTCCTGATGTGCAGCGTGTCACTGTTCAGGTGAGTCTGTTCAATAAGGAAAC
AGGCAAAGTCGAAGCCGGTATTACCAATATTGTGTTCTTTAATTATCGGATAGCTGCATCATGA
ATGAAGAAAAATAAAGGATTTACCTTACTTGAAGTGATGGTTGCTCTCGCAATTTTTGCCACAGCAGCAATGGCGCTGAC
CAAAGTGGCGATGCAGTATACCCAAGCAACCTCCAATGCCGTTCTGCGCACCAAAGCACAGTTTGTTGCAATGAATGCAG
CAGCGCAGATGGAAATCAACAGAGAATGGCTGGAGGGAACTCAGTCAGAGCAGGTGGAACAACAGGGCGAAAACTGGCAG
ATTGATAAAAGTACTCAGCCCACAGTCAGTCCTGATGTGCAGCGTGTCACTGTTCAGGTGAGTCTGTTCAATAAGGAAAC
AGGCAAAGTCGAAGCCGGTATTACCAATATTGTGTTCTTTAATTATCGGATAGCTGCATCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
72.581 |
97.638 |
0.709 |