Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CDG60_RS02015 Genome accession   NZ_CP032134
Coordinates   258137..259708 (-) Length   523 a.a.
NCBI ID   WP_087513574.1    Uniprot ID   A0A3B7LYT6
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 253137..264708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS02000 (CDG60_02000) gpmI 253943..255490 (+) 1548 WP_087513571.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CDG60_RS02005 (CDG60_02005) - 255512..256681 (+) 1170 WP_087513572.1 S41 family peptidase -
  CDG60_RS02010 (CDG60_02010) pilR 256691..258061 (-) 1371 WP_406565304.1 sigma-54-dependent transcriptional regulator Regulator
  CDG60_RS02015 (CDG60_02015) pilS 258137..259708 (-) 1572 WP_087513574.1 PAS domain-containing sensor histidine kinase Regulator
  CDG60_RS02020 (CDG60_02020) - 259733..260368 (-) 636 WP_087513575.1 response regulator -
  CDG60_RS02025 (CDG60_02025) pbpG 260604..261668 (+) 1065 WP_160116952.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG60_RS02030 (CDG60_02030) thrC 261762..262901 (-) 1140 WP_087513577.1 threonine synthase -
  CDG60_RS02035 (CDG60_02035) - 262963..264267 (-) 1305 WP_087513578.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 59266.98 Da        Isoelectric Point: 6.4905

>NTDB_id=313812 CDG60_RS02015 WP_087513574.1 258137..259708(-) (pilS) [Acinetobacter chinensis strain WCHAc010005]
MIQNSLTSEMNQYHLGMWYAAYRMIISCCMLLIFIITSVQLASDYQHPQLYLYTLIGYFLMGCLQLIGMKNIPVHITQQL
TWIFVVDVAVLSLLTFAANGPNLHLSLLFVITIFAASLLLNSRKALVITLIAVISVIYQHFISSLFALSSLNNIGNSVLL
AIMFFVVYGCGLVAVRRFQILETLNFHQSIELDRLQNINRYILEQVEMGYLVLDENCHVVLSNPAACTLLGISPLYAFNI
YPLYKLQPDLFDILKFDQLQNGEKFQFESQFSSYLVHIEVQKLIVPHQTLTLLVLQDARRINQQVQQLKLAALGQLSASI
AHEIRNPLAAIAQANVLFAGSDAEQQQSLSQMISRQTQRIDKIISDTLSMVRNRETHPTEIQLPTFIPQFIKEDLSDISQ
KIRCHLQSSDLTVCFDESQLRQVLINLIRNAIRHNAPDQNCIELVIQAEGKNIQIDVRDYGSGVALQDIAYLFQPFFSTE
ITGTGLGLYLSHSFCEANQAKLSYVEQKQGACFRIECPRVYLN

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=313812 CDG60_RS02015 WP_087513574.1 258137..259708(-) (pilS) [Acinetobacter chinensis strain WCHAc010005]
ATGATCCAGAACTCACTCACTTCAGAAATGAATCAATATCATCTGGGCATGTGGTACGCTGCATACCGTATGATTATTTC
ATGCTGTATGTTACTGATTTTTATTATCACCTCTGTACAGCTGGCATCAGACTATCAGCATCCACAGCTTTACTTATATA
CATTGATCGGTTATTTCCTGATGGGTTGCCTGCAACTGATCGGGATGAAAAATATTCCTGTTCATATTACCCAGCAACTG
ACCTGGATTTTTGTGGTCGATGTTGCAGTCCTCAGTCTGCTGACCTTTGCTGCCAATGGCCCCAATCTGCATCTGAGCCT
GCTCTTTGTCATCACTATTTTTGCAGCTTCTTTATTACTGAATTCAAGAAAAGCGCTGGTGATTACACTGATTGCCGTGA
TCAGTGTCATTTATCAGCATTTTATCAGCAGCCTGTTTGCCCTCAGCTCATTAAACAATATTGGAAACAGCGTACTGCTC
GCCATTATGTTTTTTGTTGTGTACGGCTGTGGGCTGGTAGCCGTCCGTCGCTTCCAGATTCTGGAAACACTGAATTTTCA
CCAGTCCATCGAACTGGACCGCTTACAGAATATTAACCGCTACATCCTGGAACAGGTGGAGATGGGTTATCTGGTACTGG
ATGAAAACTGCCATGTGGTGCTGAGTAATCCTGCTGCCTGCACCCTGCTGGGTATCTCTCCGCTGTATGCCTTTAATATT
TATCCACTGTATAAATTACAGCCCGACCTGTTTGATATTCTGAAGTTTGATCAGTTACAGAATGGTGAAAAATTCCAGTT
TGAATCACAGTTCAGCAGTTATCTGGTGCATATTGAAGTACAGAAACTGATTGTGCCTCACCAGACGCTGACACTGCTGG
TGCTTCAGGATGCACGGCGTATCAATCAACAGGTTCAGCAGCTGAAACTGGCTGCACTGGGACAGCTGTCTGCCAGTATT
GCCCATGAAATCCGAAACCCTCTTGCTGCTATTGCACAGGCCAATGTCCTGTTTGCCGGCAGTGACGCAGAGCAGCAGCA
AAGTCTGAGCCAGATGATCAGCCGGCAGACTCAACGGATTGATAAAATTATCAGTGATACACTCAGTATGGTGCGCAACA
GGGAAACCCATCCGACTGAAATTCAGCTTCCGACCTTTATTCCTCAGTTTATTAAAGAAGATCTTTCAGACATCTCCCAG
AAAATCCGCTGTCATCTGCAAAGCAGCGACCTGACTGTCTGCTTTGATGAATCACAGCTCAGACAGGTACTGATCAACCT
GATCCGCAATGCAATCCGGCATAATGCTCCCGATCAGAACTGTATTGAACTGGTCATACAGGCTGAGGGCAAAAACATTC
AGATTGACGTCCGTGACTATGGTTCTGGCGTTGCCTTGCAGGATATTGCCTACCTGTTTCAACCATTTTTCAGTACCGAA
ATTACCGGAACTGGTTTAGGATTGTATCTATCACACAGCTTCTGCGAAGCCAATCAGGCTAAGCTGAGCTATGTAGAACA
AAAACAAGGGGCTTGTTTCAGGATTGAATGCCCACGCGTTTATTTAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LYT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.921

97.323

0.583

Multiple sequence alignment