Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E3156_RS06465 Genome accession   NZ_CP038389
Coordinates   1316078..1316815 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O55:H7 strain DEC5B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311078..1321815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3156_RS06435 (E3156_06580) yfiL 1311236..1311601 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  E3156_RS06440 (E3156_06585) aroF 1311811..1312881 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E3156_RS06445 (E3156_06590) tyrA 1312892..1314013 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E3156_RS06450 (E3156_06595) pheA 1314056..1315216 (-) 1161 WP_000200089.1 bifunctional chorismate mutase/prephenate dehydratase -
  E3156_RS06455 (E3156_06600) pheL 1315315..1315362 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E3156_RS06460 (E3156_06605) raiA 1315466..1315807 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E3156_RS06465 (E3156_06610) comL 1316078..1316815 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E3156_RS06470 (E3156_06615) rluD 1316950..1317930 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3156_RS06475 (E3156_06620) yfiH 1317927..1318658 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  E3156_RS06480 (E3156_06625) clpC 1318788..1321361 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=313770 E3156_RS06465 WP_000197686.1 1316078..1316815(-) (comL) [Escherichia coli O55:H7 strain DEC5B]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=313770 E3156_RS06465 WP_000197686.1 1316078..1316815(-) (comL) [Escherichia coli O55:H7 strain DEC5B]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376