Detailed information NTG0313705

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: D1115_RS13795
• Genome accession: NZ_CP032093
• Coordinates: 2861483..2862487 (+)
• Length: 334 a.a.
• NCBI ID: WP_128811839.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain CAIM 1831
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2856483..2867487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1115_RS13770 (D1115_13885)	rplD	2856505..2857107 (-)	603	WP_128811832.1	50S ribosomal protein L4	-
D1115_RS13775 (D1115_13890)	rplC	2857125..2857754 (-)	630	WP_128811833.1	50S ribosomal protein L3	-
D1115_RS13780 (D1115_13895)	rpsJ	2857769..2858080 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
D1115_RS13785 (D1115_13900)	rpmE	2858558..2858779 (-)	222	WP_128811835.1	50S ribosomal protein L31	-
D1115_RS13790 (D1115_13905)	priA	2859077..2861278 (+)	2202	WP_128811837.1	primosomal protein N'	-
D1115_RS13795 (D1115_13910)	cytR	2861483..2862487 (+)	1005	WP_128811839.1	DNA-binding transcriptional regulator CytR	Regulator
D1115_RS13800 (D1115_13915)	-	2862627..2863169 (+)	543	WP_128811841.1	SPOR domain-containing protein	-
D1115_RS13805 (D1115_13920)	hslV	2863349..2863900 (+)	552	WP_038864894.1	ATP-dependent protease subunit HslV	-
D1115_RS13810 (D1115_13925)	hslU	2863930..2865261 (+)	1332	WP_128811843.1	HslU--HslV peptidase ATPase subunit	-
D1115_RS13815 (D1115_13930)	-	2865542..2866458 (+)	917	Protein_2513	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
D1115_RS13820 (D1115_13935)	rraA	2866535..2867041 (+)	507	WP_128811845.1	ribonuclease E activity regulator RraA	-
D1115_RS13825 (D1115_13940)	zapB	2867159..2867401 (-)	243	WP_128811847.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36764.15 Da
• Isoelectric Point: 6.1612

>NTDB_id=313705 D1115_RS13795 WP_128811839.1 2861483..2862487(+) (cytR) [Vibrio alfacsensis strain CAIM 1831]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRQRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTAAFEAVNYLTHLGHKRIAQVSGPETAVLCQFRQQGYQQALRRAGITQNAQYSVVTDFSFEGGAQAVRKLLELSEPPTA
LFCHCDTMAIGAIQEAKRLGWRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMLMMLELLKGHDVHSGSRLLD
TKLVVRGSAAPPLR

Nucleotide

• Length: 1005 bp

>NTDB_id=313705 D1115_RS13795 WP_128811839.1 2861483..2862487(+) (cytR) [Vibrio alfacsensis strain CAIM 1831]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGGGTTTCGACAGCGACAGTTTCACGAGCGCTCATGAACCCAGAAAA
AGTCTCATCTTCCACCAGACAACGTGTTGAAGATGCCGTACTTGAGGCTGGCTATTCTCCAAATTCATTAGCACGCAATT
TACGTAGAAATGAATCAAAAACCATTGTCACTATAGTGCCGGACATTTGTGATCCTTATTTTTCGGAGATCATTCGCGGT
ATCGAAGATGCCGCGATGGAGCATGGCTACTTAGTTCTACTTGGCGATAGCGGACAGCAGAAAAAACGTGAGAGCTCATT
CGTCAACTTAGTCTTTACCAAACAAGCCGACGGCATGTTATTACTAGGTACCGACCTGCCGTTTGATGTCAGCAAACCTG
AACAGAAGAATTTGCCTCCTATGGTCATGGCATGTGAGTTCGCCCCTGAGCTTGAACTGCCAACCGTGCACATTGATAAC
CTCACCGCAGCTTTTGAAGCCGTCAACTATCTCACTCACCTAGGACATAAGCGAATCGCACAAGTGTCTGGCCCAGAGAC
GGCTGTGCTTTGTCAGTTCCGCCAACAAGGTTATCAGCAAGCACTGCGCCGCGCTGGCATTACTCAGAATGCACAATACA
GCGTAGTTACCGACTTCTCTTTCGAGGGTGGCGCCCAAGCGGTGCGTAAGCTACTCGAACTTTCCGAGCCACCAACCGCC
CTATTTTGTCATTGTGACACAATGGCGATTGGCGCGATCCAAGAAGCAAAACGGCTTGGTTGGCGAGTACCTCAAGATCT
GTCTGTCGTCGGGTTTGATGATATTCAGTTTGCTCAATACTGCGATCCACCGTTAACGACCGTTTCTCAGCCTCGTTATG
AAATTGGCCGACAAGCCATGTTAATGATGTTAGAGCTCCTTAAAGGCCACGACGTACATTCTGGCTCTCGTCTACTTGAT
ACCAAACTTGTCGTACGTGGCAGTGCTGCGCCACCGTTACGATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	94.012	100	0.94
cytR	Vibrio cholerae C6706	89.458	99.401	0.889