Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   D1115_RS03065 Genome accession   NZ_CP032093
Coordinates   595351..595965 (-) Length   204 a.a.
NCBI ID   WP_128810226.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 590351..600965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS03055 (D1115_03060) aceF 591569..593497 (+) 1929 WP_128810224.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  D1115_RS03060 (D1115_03065) lpdA 593756..595186 (+) 1431 WP_128810225.1 dihydrolipoyl dehydrogenase -
  D1115_RS03065 (D1115_03070) opaR 595351..595965 (-) 615 WP_128810226.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  D1115_RS03070 (D1115_03075) hpt 596289..596819 (+) 531 WP_128810227.1 hypoxanthine phosphoribosyltransferase -
  D1115_RS03075 (D1115_03080) can 596891..597559 (-) 669 WP_128810228.1 carbonate dehydratase -
  D1115_RS03080 (D1115_03085) - 597830..599500 (+) 1671 WP_128810229.1 SulP family inorganic anion transporter -
  D1115_RS03085 (D1115_03090) - 599718..600635 (+) 918 WP_128812240.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23551.67 Da        Isoelectric Point: 6.0733

>NTDB_id=313695 D1115_RS03065 WP_128810226.1 595351..595965(-) (opaR) [Vibrio alfacsensis strain CAIM 1831]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQYSNFLS
DNIDLDLHARENISNITNAMLELVSQDCHWQKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFNGICYSLFVQANRTSNDSELATLTASYLNMLCIYKHEH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=313695 D1115_RS03065 WP_128810226.1 595351..595965(-) (opaR) [Vibrio alfacsensis strain CAIM 1831]
ATGGATTCAATCGCGAAGAGACCTCGCACTAGGCTTTCCCCTTTAAAACGTAAACAGCAACTTATGGAAATTGCGTTAGA
AGTATTCGCACGTCGTGGCATCGGTCGCGGTGGCCATGCAGATATCGCAGACATCGCTCAAGTTTCAGTCGCAACAGTTT
TCAATTACTTCCCAACTCGCGAAGACTTAGTTGATGAAGTGTTAAATCATGTCGTTCGTCAATACTCTAACTTCTTATCT
GACAATATCGATTTAGACCTGCATGCTCGCGAAAATATCTCAAATATTACCAATGCGATGCTTGAATTAGTGAGCCAAGA
TTGTCATTGGCAGAAAGTATGGTTTGAATGGAGCGCATCGACGCGTGATGAGGTTTGGCCTCTATTTGTCTCTACAAATA
GAACGAACCAACTGTTAGTTCAAAACATGTTCATTAAAGCCATTGAGCGAGGTGAAGTCTGCGATCAGCATGAGCCAGAA
CACTTGGCAAACCTGTTCAATGGTATTTGTTACTCGTTGTTCGTCCAAGCCAATCGAACCAGTAATGATAGCGAACTAGC
GACGCTTACCGCCTCTTACCTAAATATGCTTTGTATTTATAAACATGAGCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

89.216

100

0.892
  hapR Vibrio cholerae C6706

72

98.039

0.706
  hapR Vibrio cholerae strain A1552

72

98.039

0.706

Multiple sequence alignment