Detailed information NTG0313688

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D1115_RS02795
• Genome accession: NZ_CP032093
• Coordinates: 544283..545269 (+)
• Length: 328 a.a.
• NCBI ID: WP_128810188.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain CAIM 1831
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 539283..550269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1115_RS02760 (D1115_02765)	ftsB	539291..539569 (+)	279	WP_128810181.1	cell division protein FtsB	-
D1115_RS02765 (D1115_02770)	ispD	539574..540281 (+)	708	WP_128810182.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D1115_RS02770 (D1115_02775)	ispF	540296..540772 (+)	477	WP_128810183.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D1115_RS02775 (D1115_02780)	truD	540819..541862 (+)	1044	WP_128810184.1	tRNA pseudouridine(13) synthase TruD	-
D1115_RS02780 (D1115_02785)	surE	541862..542638 (+)	777	WP_128810185.1	5'/3'-nucleotidase SurE	-
D1115_RS02785 (D1115_02790)	-	542638..543264 (+)	627	WP_128810186.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D1115_RS02790 (D1115_02795)	-	543279..544202 (+)	924	WP_128810187.1	peptidoglycan DD-metalloendopeptidase family protein	-
D1115_RS02795 (D1115_02800)	rpoS	544283..545269 (+)	987	WP_128810188.1	RNA polymerase sigma factor RpoS	Regulator
D1115_RS02800 (D1115_02805)	mutS	545380..547941 (-)	2562	WP_128810189.1	DNA mismatch repair protein MutS	-
D1115_RS02805 (D1115_02810)	pncC	548026..548508 (+)	483	WP_128810190.1	nicotinamide-nucleotide amidase	-
D1115_RS02810 (D1115_02815)	recA	548709..549752 (+)	1044	WP_128810191.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37459.58 Da
• Isoelectric Point: 4.8928

>NTDB_id=313688 D1115_RS02795 WP_128810188.1 544283..545269(+) (rpoS) [Vibrio alfacsensis strain CAIM 1831]
MSISNTVTKVEEFGYDKTAVQSTASELEKTPTKQTKTVVREELDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVSNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=313688 D1115_RS02795 WP_128810188.1 544283..545269(+) (rpoS) [Vibrio alfacsensis strain CAIM 1831]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGGTTATGACAAAACGGCAGTGCAAAGTACAGCAAGCGAACT
TGAAAAAACTCCGACTAAACAAACCAAAACGGTTGTACGCGAAGAGCTTGACGCGAGCAACAAAAGCCTAGATGCCACGC
AACTGTATCTTGGTGAGATAGGTTTCTCTCCACTACTTACTGCAGAAGAAGAAGTTCTCTATGCTCGTCGTGCGCTTCGA
GGTGATGAAGCTGCGCGCAAACGAATGATCGAGAGTAACTTGCGTCTAGTGGTTAAAATTTCTCGTCGATACAGCAACCG
TGGTTTAGCGCTGCTTGATCTTATTGAAGAAGGCAATCTTGGTTTGATCCGCGCGGTAGAGAAGTTTGACCCAGAGCGCG
GCTTCCGTTTTTCTACTTATGCGACATGGTGGATCCGCCAAACTATCGAACGCGCATTGATGAACCAAACACGCACGATT
CGCCTACCAATTCATGTTGTGAAAGAGCTGAACATTTATCTGCGCACAGCGCGTGAACTCTCTCAGAAGCTCGATCATGA
ACCAACGGCAGAAGAAATTGCCGCACAGTTGGATATCCCTGTTGAAGACGTCAGCAAGATGCTGCGTCTGAATGAGCGCA
TTAGTTCAGTCGACACACCTATTGGTGGTGATGGCGAAAAGGCTCTCCTCGACATTATCCCAGACGTAAGCAACTCTGAT
CCGGAAGTATCAACGCAAGATGATGATATTAAGTCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTACTAGCACGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACGC
GTGAGCGTGTTCGTCAGATACAAGTTGAAGGTTTGCGTCGATTGCGCGAGATTTTGATCAAACAAGGTCTGAATATGGAA
AACCTATTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854