Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | D1115_RS01640 | Genome accession | NZ_CP032093 |
| Coordinates | 319424..319999 (+) | Length | 191 a.a. |
| NCBI ID | WP_128810017.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain CAIM 1831 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 314424..324999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1115_RS01625 (D1115_01630) | oxyR | 314743..315651 (+) | 909 | WP_128810015.1 | DNA-binding transcriptional regulator OxyR | - |
| D1115_RS01630 (D1115_01635) | - | 315723..318287 (-) | 2565 | WP_128810016.1 | penicillin-binding protein 1A | - |
| D1115_RS01635 (D1115_01640) | pilM | 318429..319440 (+) | 1012 | Protein_261 | type IV pilus biogenesis protein PilM | - |
| D1115_RS01640 (D1115_01645) | pilN | 319424..319999 (+) | 576 | WP_128810017.1 | PilN domain-containing protein | Machinery gene |
| D1115_RS01645 (D1115_01650) | pilO | 319992..320585 (+) | 594 | WP_128810018.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| D1115_RS01650 (D1115_01655) | pilP | 320569..321084 (+) | 516 | WP_128812230.1 | pilus assembly protein PilP | Machinery gene |
| D1115_RS01655 (D1115_01660) | pilQ | 321144..322823 (+) | 1680 | WP_418369098.1 | type IV pilus secretin PilQ | Machinery gene |
| D1115_RS01660 (D1115_01665) | aroK | 323012..323530 (+) | 519 | WP_099080818.1 | shikimate kinase AroK | - |
| D1115_RS01665 (D1115_01670) | aroB | 323559..324659 (+) | 1101 | WP_128810019.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22223.47 Da Isoelectric Point: 10.1816
>NTDB_id=313679 D1115_RS01640 WP_128810017.1 319424..319999(+) (pilN) [Vibrio alfacsensis strain CAIM 1831]
MLYRINLLPWREYQRKAHRHRFVSLAVFGVMIAAIIQWGGNQYLQAQQAEQQKRLDYLSNHITLFDQRIEAMKIAEQEHR
QVLQRLNVVDQLQRGRSKTTAFMNLIPSVIPEGVYVDKIKINHYYVELSGIADSTSHLATMLDNMERSAKLYEVDMHSIV
HGKSRFGRSFQQFNVSFRLREAQGAGSLHHG
MLYRINLLPWREYQRKAHRHRFVSLAVFGVMIAAIIQWGGNQYLQAQQAEQQKRLDYLSNHITLFDQRIEAMKIAEQEHR
QVLQRLNVVDQLQRGRSKTTAFMNLIPSVIPEGVYVDKIKINHYYVELSGIADSTSHLATMLDNMERSAKLYEVDMHSIV
HGKSRFGRSFQQFNVSFRLREAQGAGSLHHG
Nucleotide
Download Length: 576 bp
>NTDB_id=313679 D1115_RS01640 WP_128810017.1 319424..319999(+) (pilN) [Vibrio alfacsensis strain CAIM 1831]
ATGTTGTATCGCATTAATTTGTTGCCATGGCGCGAGTATCAACGTAAGGCGCATCGTCACCGTTTTGTTAGCCTCGCTGT
TTTTGGAGTAATGATTGCGGCGATCATTCAGTGGGGAGGAAATCAGTATTTACAGGCTCAACAAGCTGAGCAGCAAAAGC
GTCTAGATTATCTCTCCAATCACATTACGCTTTTTGATCAGCGGATTGAAGCGATGAAAATTGCGGAGCAAGAGCATCGC
CAAGTTCTGCAGCGATTAAATGTTGTTGACCAATTACAGCGAGGACGAAGCAAAACGACGGCGTTTATGAATCTTATCCC
CTCGGTGATTCCTGAGGGGGTTTATGTCGACAAGATTAAAATCAATCACTATTACGTTGAGCTTTCTGGGATTGCAGATA
GCACATCCCATCTGGCGACGATGCTCGATAATATGGAGCGTTCAGCAAAGCTTTATGAAGTGGATATGCATTCTATTGTT
CATGGAAAATCACGCTTTGGGAGGTCATTCCAACAATTTAATGTCTCTTTTCGATTACGGGAAGCGCAAGGGGCAGGAAG
TCTACATCATGGTTAA
ATGTTGTATCGCATTAATTTGTTGCCATGGCGCGAGTATCAACGTAAGGCGCATCGTCACCGTTTTGTTAGCCTCGCTGT
TTTTGGAGTAATGATTGCGGCGATCATTCAGTGGGGAGGAAATCAGTATTTACAGGCTCAACAAGCTGAGCAGCAAAAGC
GTCTAGATTATCTCTCCAATCACATTACGCTTTTTGATCAGCGGATTGAAGCGATGAAAATTGCGGAGCAAGAGCATCGC
CAAGTTCTGCAGCGATTAAATGTTGTTGACCAATTACAGCGAGGACGAAGCAAAACGACGGCGTTTATGAATCTTATCCC
CTCGGTGATTCCTGAGGGGGTTTATGTCGACAAGATTAAAATCAATCACTATTACGTTGAGCTTTCTGGGATTGCAGATA
GCACATCCCATCTGGCGACGATGCTCGATAATATGGAGCGTTCAGCAAAGCTTTATGAAGTGGATATGCATTCTATTGTT
CATGGAAAATCACGCTTTGGGAGGTCATTCCAACAATTTAATGTCTCTTTTCGATTACGGGAAGCGCAAGGGGCAGGAAG
TCTACATCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
64.398 |
100 |
0.644 |
| pilN | Vibrio cholerae strain A1552 |
52.577 |
100 |
0.534 |