Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D2195_RS12145 Genome accession   NZ_CP032078
Coordinates   2545809..2546438 (+) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain CT30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2540809..2551438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS12125 (D2195_12985) ycbZ 2541210..2542970 (-) 1761 WP_000156476.1 Lon protease family protein -
  D2195_RS12130 (D2195_12990) matP 2543156..2543608 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D2195_RS12135 (D2195_12995) ompA 2543684..2544724 (-) 1041 WP_001314606.1 porin OmpA -
  D2195_RS12140 (D2195_13005) sulA 2545081..2545590 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  D2195_RS12145 (D2195_13010) sxy/tfoX 2545809..2546438 (+) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D2195_RS12150 (D2195_13015) yccS 2546401..2548563 (-) 2163 WP_000875041.1 YccS family putative transporter -
  D2195_RS12155 (D2195_13020) yccF 2548573..2549019 (-) 447 WP_001261236.1 YccF domain-containing protein -
  D2195_RS12160 (D2195_13025) helD 2549142..2551196 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=313611 D2195_RS12145 WP_000699018.1 2545809..2546438(+) (sxy/tfoX) [Escherichia coli strain CT30]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=313611 D2195_RS12145 WP_000699018.1 2545809..2546438(+) (sxy/tfoX) [Escherichia coli strain CT30]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment