Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   D2E16_RS09730 Genome accession   NZ_CP032064
Coordinates   1990171..1990860 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985171..1995860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS09705 (D2E16_09995) - 1985683..1986354 (-) 672 WP_192369573.1 NADPH-dependent oxidoreductase -
  D2E16_RS09710 (D2E16_10000) dnaI 1986351..1987250 (-) 900 WP_192369574.1 primosomal protein DnaI -
  D2E16_RS09715 (D2E16_10005) - 1987250..1988401 (-) 1152 WP_192369575.1 replication initiation/membrane attachment protein -
  D2E16_RS09720 (D2E16_10010) nrdR 1988388..1988879 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  D2E16_RS09725 (D2E16_10015) - 1988951..1990081 (-) 1131 WP_002942701.1 AI-2E family transporter -
  D2E16_RS09730 (D2E16_10020) covR 1990171..1990860 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  D2E16_RS09735 (D2E16_10025) gndA 1990942..1992369 (-) 1428 WP_105131159.1 NADP-dependent phosphogluconate dehydrogenase -
  D2E16_RS09740 (D2E16_10030) - 1992466..1993005 (-) 540 WP_029187535.1 YceD family protein -
  D2E16_RS09745 (D2E16_10035) trxB 1993015..1993932 (-) 918 WP_192369576.1 thioredoxin-disulfide reductase -
  D2E16_RS09750 (D2E16_10040) - 1993946..1994170 (-) 225 WP_002936682.1 DUF4059 family protein -
  D2E16_RS09755 (D2E16_10045) - 1994188..1995531 (-) 1344 WP_043027103.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=313545 D2E16_RS09730 WP_012027645.1 1990171..1990860(-) (covR) [Streptococcus suis strain YSJ17]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=313545 D2E16_RS09730 WP_012027645.1 1990171..1990860(-) (covR) [Streptococcus suis strain YSJ17]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment