Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   D2E16_RS08445 Genome accession   NZ_CP032064
Coordinates   1760075..1760878 (-) Length   267 a.a.
NCBI ID   WP_004298858.1    Uniprot ID   A0A0Z8N7Q9
Organism   Streptococcus suis strain YSJ17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755075..1765878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS08430 (D2E16_08690) recR 1755389..1755985 (-) 597 WP_002935848.1 recombination mediator RecR -
  D2E16_RS08435 (D2E16_08695) pbp2b 1755994..1758066 (-) 2073 WP_192368966.1 penicillin-binding protein PBP2B -
  D2E16_RS08440 (D2E16_08700) vga(F) 1758158..1759543 (-) 1386 WP_225620735.1 ABC-F type ribosomal protection protein Vga(F) -
  D2E16_RS08445 (D2E16_08710) vicX 1760075..1760878 (-) 804 WP_004298858.1 MBL fold metallo-hydrolase Regulator
  D2E16_RS08450 (D2E16_08715) micB 1760885..1762234 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  D2E16_RS08455 (D2E16_08720) micA 1762227..1762931 (-) 705 WP_024376690.1 response regulator YycF Regulator
  D2E16_RS08460 (D2E16_08725) - 1763125..1763886 (+) 762 WP_172014668.1 amino acid ABC transporter ATP-binding protein -
  D2E16_RS08465 (D2E16_08730) - 1763897..1764736 (+) 840 WP_192368965.1 transporter substrate-binding domain-containing protein -
  D2E16_RS08470 (D2E16_08735) - 1764751..1765449 (+) 699 WP_024401921.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29543.64 Da        Isoelectric Point: 5.9824

>NTDB_id=313537 D2E16_RS08445 WP_004298858.1 1760075..1760878(-) (vicX) [Streptococcus suis strain YSJ17]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=313537 D2E16_RS08445 WP_004298858.1 1760075..1760878(-) (vicX) [Streptococcus suis strain YSJ17]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGATCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTCTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCTCAATTTT
ATCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTAACGGATACTGGCTATGTCAGTGATCGAATGGCTGGGATTGTG
GCGAATGCAGATGCCTATTTGATTGAGTCTAATCATGATGTTGAAATCTTGCGTGCGGGTTCGTATTCTTGGAACCTCAA
GCAACGGATTTTGTCTGATAAGGGGCACCTTTGTAACGAGGATGGTGCGGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8N7Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764

Multiple sequence alignment