Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   D2E16_RS06365 Genome accession   NZ_CP032064
Coordinates   1291789..1293015 (-) Length   408 a.a.
NCBI ID   WP_192369464.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286789..1298015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06335 (D2E16_06510) - 1286807..1287031 (-) 225 WP_099807026.1 hypothetical protein -
  D2E16_RS06340 (D2E16_06515) - 1287093..1288415 (-) 1323 WP_169050635.1 excalibur calcium-binding domain-containing protein -
  D2E16_RS06345 (D2E16_06520) - 1288550..1288732 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  D2E16_RS06350 (D2E16_06525) lepA 1288783..1290615 (-) 1833 WP_192369466.1 translation elongation factor 4 -
  D2E16_RS06355 (D2E16_06530) ndk 1290711..1291124 (-) 414 WP_192369465.1 nucleoside-diphosphate kinase -
  D2E16_RS06360 (D2E16_06535) yihA 1291147..1291734 (-) 588 WP_029179053.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  D2E16_RS06365 (D2E16_06540) clpX 1291789..1293015 (-) 1227 WP_192369464.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  D2E16_RS06370 (D2E16_06550) - 1293213..1293725 (-) 513 WP_192369463.1 dihydrofolate reductase -
  D2E16_RS06375 (D2E16_06555) - 1293901..1294740 (-) 840 WP_029943509.1 thymidylate synthase -
  D2E16_RS06380 (D2E16_06560) - 1294793..1295095 (-) 303 WP_012775088.1 hypothetical protein -
  D2E16_RS06385 (D2E16_06570) - 1295511..1296470 (-) 960 WP_002943166.1 ROK family glucokinase -
  D2E16_RS06390 (D2E16_06575) - 1296567..1296902 (-) 336 WP_024380703.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45300.82 Da        Isoelectric Point: 4.5610

>NTDB_id=313530 D2E16_RS06365 WP_192369464.1 1291789..1293015(-) (clpX) [Streptococcus suis strain YSJ17]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDNRDESDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=313530 D2E16_RS06365 WP_192369464.1 1291789..1293015(-) (clpX) [Streptococcus suis strain YSJ17]
ATGGCTGTTAAGCATACACAGGAGCTCATCTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTGTTCATCTGTAATGAATGTGTGGAGCTGGCTCAGGAAATTATTCGAGAAGAATTGGCAGAAGAAGTAT
TGACTGACCTGGCTGACACTCCAAAGCCACAGGAATTACTCAATATTTTAAACAATTATGTTATCGGACAGGACCGTGCT
AAACGCGCCTTGGCAGTAGCAGTCTACAACCACTACAAGCGGATCAATTTCCAAGATAACCGTGATGAAAGCGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGTCCAACGGGTTCTGGTAAGACTTTCTTGGCTCAAACCTTGGCCAAAAGTT
TGAATGTACCATTCGCCATTGCAGATGCGACAGCATTAACTGAGGCTGGTTACGTTGGTGAAGACGTGGAAAATATCCTT
CTTAAACTCTTGCAGGCAGCGGATTTTAACATTGACCGTGCTGAGAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTATCCATTACCCGCGATGTTTCGGGTGAAGGTGTCCAACAGGCTCTCTTGAAAATCATTG
AGGGAACAGTTGCCAGCGTGCCACCACAAGGCGGACGCAAGCATCCTAACCAAGAAATGATTCATGTCGATACCAAAAAC
ATTTTATTCATCGTAGGTGGTGCTTTTGACGGGATTGAGGAAATCGTCAAACAACGGTTAGGTGAGAAAATCATCGGTTT
TGGTCAAAACAATCGTGCCATCGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAATTGATTGGTCGCTTGCCGGTATTTGCAGCTTTGGACCAGTTAACAACAGAAGATTTGGTTCGCATCTTG
ACGGAGCCTAAGAATGCACTGGTTAAACAATACCAAACACTATTGTCTTACGATGATGTAGAGTTGGATTTTGACGAGGA
TGCCTTGTTGGCCATTGCTGAGAAAGCGATTGAGCGGAAAACAGGAGCGCGTGGACTTCGTTCCATTATCGAAGAAACCA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment