Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E3159_RS21300 Genome accession   NZ_CP038376
Coordinates   4261372..4262109 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157:H7 strain F1273     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4256372..4267109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3159_RS21285 (E3159_21925) clpC 4256826..4259399 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  E3159_RS21290 (E3159_21930) yfiH 4259529..4260260 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  E3159_RS21295 (E3159_21935) rluD 4260257..4261237 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3159_RS21300 (E3159_21940) comL 4261372..4262109 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E3159_RS21305 (E3159_21945) raiA 4262380..4262721 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E3159_RS21310 (E3159_21950) pheL 4262825..4262872 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E3159_RS21315 (E3159_21955) pheA 4262971..4264131 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E3159_RS21320 (E3159_21960) tyrA 4264174..4265295 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E3159_RS21325 (E3159_21965) aroF 4265306..4266376 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E3159_RS21330 (E3159_21970) yfiL 4266586..4266951 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=313482 E3159_RS21300 WP_000197686.1 4261372..4262109(+) (comL) [Escherichia coli O157:H7 strain F1273]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=313482 E3159_RS21300 WP_000197686.1 4261372..4262109(+) (comL) [Escherichia coli O157:H7 strain F1273]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376