Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   E3160_RS16160 Genome accession   NZ_CP038374
Coordinates   3296907..3297563 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli O157:H7 strain F3113     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3291907..3302563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3160_RS16120 (E3160_16545) - 3292419..3292679 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  E3160_RS16125 (E3160_16550) - 3292871..3293011 (+) 141 WP_000078920.1 Hok/Gef family protein -
  E3160_RS16130 (E3160_16555) - 3293200..3293481 (-) 282 WP_001303543.1 hypothetical protein -
  E3160_RS16150 (E3160_16575) pgsA 3294473..3295021 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E3160_RS16155 (E3160_16580) uvrC 3295078..3296910 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  E3160_RS16160 (E3160_16585) letA 3296907..3297563 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  E3160_RS28020 (E3160_16590) - 3297705..3297821 (+) 117 WP_001302039.1 hypothetical protein -
  E3160_RS16165 (E3160_16595) yecU 3297859..3298035 (+) 177 WP_001302050.1 protein YecU -
  E3160_RS16170 (E3160_16600) yecF 3298022..3298246 (+) 225 WP_000106479.1 DUF2594 family protein YecF -
  E3160_RS16175 (E3160_16605) sdiA 3298314..3299036 (-) 723 WP_001154289.1 transcriptional regulator SdiA -
  E3160_RS16180 (E3160_16610) tcyN 3299266..3300018 (-) 753 WP_001273005.1 L-cystine ABC transporter ATP-binding protein TcyN -
  E3160_RS16185 (E3160_16615) tcyL 3300015..3300683 (-) 669 WP_001158226.1 cystine ABC transporter permease -
  E3160_RS16190 (E3160_16620) dcyD 3300698..3301684 (-) 987 WP_001128225.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=313392 E3160_RS16160 WP_000611328.1 3296907..3297563(-) (letA) [Escherichia coli O157:H7 strain F3113]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=313392 E3160_RS16160 WP_000611328.1 3296907..3297563(-) (letA) [Escherichia coli O157:H7 strain F3113]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTAAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACGAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482