Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SaO17_RS07740 Genome accession   NZ_CP032051
Coordinates   1554065..1554511 (-) Length   148 a.a.
NCBI ID   WP_118848117.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549065..1559511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO17_RS07710 (SaO17_01431) gcvPA 1549992..1551338 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SaO17_RS07715 (SaO17_01432) gcvT 1551358..1552449 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  SaO17_RS07720 (SaO17_01433) - 1552607..1553131 (-) 525 WP_001015120.1 shikimate kinase -
  SaO17_RS07725 - 1553121..1553267 (-) 147 WP_001789879.1 hypothetical protein -
  SaO17_RS07730 (SaO17_01434) comGF 1553364..1553861 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  SaO17_RS07735 comGE 1553779..1554078 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  SaO17_RS07740 (SaO17_01435) comGD 1554065..1554511 (-) 447 WP_118848117.1 competence type IV pilus minor pilin ComGD Machinery gene
  SaO17_RS07745 (SaO17_01436) comGC 1554489..1554800 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SaO17_RS07750 (SaO17_01437) comGB 1554814..1555884 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  SaO17_RS07755 (SaO17_01438) comGA 1555856..1556830 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SaO17_RS07760 (SaO17_01439) - 1556882..1557505 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SaO17_RS07765 - 1557502..1557831 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SaO17_RS07770 (SaO17_01440) - 1557831..1558817 (-) 987 WP_118848118.1 ROK family glucokinase -
  SaO17_RS07775 (SaO17_01441) - 1558814..1559017 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17119.26 Da        Isoelectric Point: 10.3312

>NTDB_id=313366 SaO17_RS07740 WP_118848117.1 1554065..1554511(-) (comGD) [Staphylococcus aureus strain O17]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRTIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=313366 SaO17_RS07740 WP_118848117.1 1554065..1554511(-) (comGD) [Staphylococcus aureus strain O17]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
CAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment